RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PUS1Q9Y606 427 aaKnown RBP eCLIP13.12□□□□□ -0.31
CSPG4-201ENST00000308508 APBB3O95704 486 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 MSMO1Q15800 293 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 KCNJ8Q15842 424 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 SMYD5Q6GMV2 418 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 HMGN2P46Q86SG4 172 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 METTL27Q8N6F8 245 aaPredicted RBP13.11□□□□□ -0.31
CSPG4-201ENST00000308508 CLEC4DQ8WXI8 215 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 UHRF2Q96PU4 802 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 AGPAT4Q9NRZ5 378 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 DCDC2BA2VCK2 349 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 PTPRCAPQ14761 206 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 ZNF74Q16587 644 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 ACSM3Q53FZ2 586 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 ACTBL2Q562R1 376 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 TMEM200AQ86VY9 491 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 PRR18Q8N4B5 295 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 NIPSNAP3BQ9BS92 247 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 SLIT2O94813 1529 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 NRP1O14786 923 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 DEFB134Q4QY38 66 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 KDELC1Q6UW63 502 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 PPP1R35Q8TAP8 253 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 RAB39BQ96DA2 213 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 DNAJA3Q96EY1 480 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 ARPC5LQ9BPX5 153 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 PCDHA9Q9Y5H5 950 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 PCDHAC2Q9Y5I4 1007 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 LOC102723532A0A0G2JNH3 316 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 C17orf112F2Z3M2 114 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 MSTNO14793 375 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 PKLRP30613 574 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 SLC14A1Q13336 389 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 ZNF425Q6IV72 752 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 FIGNL1Q6PIW4 674 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 SBSNQ6UWP8 590 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 TPRA1Q86W33 373 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 CMTM8Q8IZV2 173 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 OR2A12Q8NGT7 310 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 RAB7BQ96AH8 199 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 MIB2Q96AX9 1013 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 SGK3Q96BR1 496 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 UBL4AP11441 157 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 BMP4P12644 408 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 HNF1BP35680 557 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 CDKN2DP55273 166 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 MZT1Q08AG7 82 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 KIAA0895LQ68EN5 471 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 CPOQ8IVL8 374 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 KIAA1143Q96AT1 154 aaPredicted RBP13.11□□□□□ -0.31
CSPG4-201ENST00000308508 ZNF597Q96LX8 424 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 RNF212BA8MTL3 300 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 CXADRP78310 365 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 CNN3Q15417 329 aaKnown RBP13.11□□□□□ -0.31
CSPG4-201ENST00000308508 ZNF691Q5VV52 312 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 GATA6Q92908 595 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 MRGPRX2Q96LB1 330 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 SORCS2Q96PQ0 1159 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 SLC6A14Q9UN76 642 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 RHBDD3Q9Y3P4 386 aa13.11□□□□□ -0.31
CSPG4-201ENST00000308508 CHD2O14647 1828 aaKnown RBP13.1□□□□□ -0.31
CSPG4-201ENST00000308508 OR5K4A6NMS3 321 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 ZNF780AO75290 641 aaPredicted RBP13.1□□□□□ -0.31
CSPG4-201ENST00000308508 S1PR4O95977 384 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 SFRP5Q5T4F7 317 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 TXNDC8Q6A555 127 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 BAGE3Q86Y29 109 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 BAGE2Q86Y30 109 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 GLB1L2Q8IW92 636 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 LRIG1Q96JA1 1093 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 MEIS3P2A8K0S8 358 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 ARRB1P49407 418 aaPredicted RBP13.1□□□□□ -0.31
CSPG4-201ENST00000308508 DOC2AQ14183 400 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 UPP1Q16831 310 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 MS4A4EQ96PG1 132 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 RASD1Q9Y272 281 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 A0A0D9SEW6 157 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 HOXB2P14652 356 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 FDXRP22570 491 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 EVX2Q03828 476 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 ELOCQ15369 112 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 OR11A1Q9GZK7 315 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 PATZ1Q9HBE1 687 aaKnown RBP13.1□□□□□ -0.31
CSPG4-201ENST00000308508 UFSP2Q9NUQ7 469 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 C1orf123Q9NWV4 160 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 DNAJC15Q9Y5T4 150 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 HLA-HP01893 362 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 PPT1P50897 306 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 CLDN6P56747 220 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 RAB30Q15771 203 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 PIWIL3Q7Z3Z3 882 aaKnown RBP13.1□□□□□ -0.31
CSPG4-201ENST00000308508 SLAIN1Q8ND83 568 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 PLPP5Q8NEB5 264 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 NANPQ8TBE9 248 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 ZNF160Q9HCG1 818 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 DCAF13Q9NV06 445 aaKnown RBP13.1□□□□□ -0.31
CSPG4-201ENST00000308508 B4GALT6Q9UBX8 382 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 DCTP40126 519 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 DHPSP49366 369 aaPredicted RBP13.1□□□□□ -0.31
CSPG4-201ENST00000308508 MLLT11Q13015 90 aaPredicted RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms