RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 ZNF791Q3KP31 576 aaPredicted RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 SCIMPQ6UWF3 145 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 CEACAM20Q6UY09 585 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TMEM173Q86WV6 379 aaPredicted RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 IGDCC3Q8IVU1 814 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 FAM217AQ8IXS0 508 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 NSUN4Q96CB9 384 aaKnown RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 BARD1Q99728 777 aaKnown RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 BABAM2Q9NXR7 383 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TVP23BQ9NYZ1 205 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 BCS1LQ9Y276 419 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TMEM212A6NML5 194 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 FTCDNL1E5RQL4 147 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 IRAK2O43187 625 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 RPLP1P05386 114 aaKnown RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 SUPT20HL2P0C7V6 817 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 SYN1P17600 705 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 CXCR1P25024 350 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 VIPR1P32241 457 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 UBE2G2P60604 165 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 HNRNPKP61978 463 aaKnown RBP eCLIP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 RTL8BQ17RB0 113 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 AGBL4Q5VU57 503 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 PRAMEF8Q5VWM4 474 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 PRAMEF7Q5VXH5 474 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 CHADLQ6NUI6 762 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 THOC6Q86W42 341 aaKnown RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 OR13C9Q8NGT0 318 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 OR9A4Q8NGU2 314 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TANKQ92844 425 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 SCMH1Q96GD3 660 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 AHCYL2Q96HN2 611 aaKnown RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 RBP7Q96R05 134 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TMEM70Q9BUB7 260 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ELF5Q9UKW6 265 aaPredicted RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 KDM6BO15054 1643 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 AP4M1O00189 453 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 XYLBO75191 536 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 MT-CO1P00395 513 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 SRMP19623 302 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 OMGP23515 440 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 BMI1P35226 326 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 CASP3P42574 277 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 MASP1P48740 699 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 RAB28P51157 221 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 FAM69BQ5VUD6 431 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 BRICD5Q6PL45 260 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 SLC38A9Q8NBW4 561 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 ADAMTS18Q8TE60 1221 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 ZFP90Q8TF47 636 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 BCL7CQ8WUZ0 217 aaPredicted RBP4.59□□□□□ -1.67
CSMD3-201ENST00000297405 SLC41A2Q96JW4 573 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 LMLNQ96KR4 655 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 FAAP24Q9BTP7 215 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 DNAJC5Q9H3Z4 198 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 OSGEPL1Q9H4B0 414 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 SIRT7Q9NRC8 400 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 CSNK1G3Q9Y6M4 447 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 HMGCLP35914 325 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 RNF144AP50876 292 aaPredicted RBP4.59□□□□□ -1.67
CSMD3-201ENST00000297405 TCTE1Q5JU00 501 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.59□□□□□ -1.67
CSMD3-201ENST00000297405 ADGRG3Q86Y34 549 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 NPAS3Q8IXF0 933 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 POGLUT1Q8NBL1 392 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 CMTM7Q96FZ5 175 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 MCOLN1Q9GZU1 580 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 HOXD1Q9GZZ0 328 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 SDCBP2Q9H190 292 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 AKTIPQ9H8T0 292 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 RANGRFQ9HD47 186 aaPredicted RBP4.59□□□□□ -1.67
CSMD3-201ENST00000297405 SIDT1Q9NXL6 827 aaKnown RBP4.59□□□□□ -1.67
CSMD3-201ENST00000297405 E7EQ34 232 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 H7BYZ3 331 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 GOSR2O14653 212 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 CRHP06850 196 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 TFPTP0C1Z6 253 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 CD99P14209 185 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 HTRA3P83110 453 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 MPPED2Q15777 294 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 GRIK5Q16478 980 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 DPYSL2Q16555 572 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 PCGF3Q3KNV8 242 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 PDSS1Q5T2R2 415 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 NANOGP8Q6NSW7 305 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 ZNF343Q6P1L6 599 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 ZNF610Q8N9Z0 462 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 UBAC2Q8NBM4 344 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 EXOSC8Q96B26 276 aaKnown RBP4.59□□□□□ -1.67
CSMD3-201ENST00000297405 ADAD1Q96M93 576 aaKnown RBP4.59□□□□□ -1.67
CSMD3-201ENST00000297405 SLC22A12Q96S37 553 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 DPH1Q9BZG8 443 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 MAGEH1Q9H213 219 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 NANOGQ9H9S0 305 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 CAMK2AQ9UQM7 478 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 PCDHB9Q9Y5E1 797 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 PCDHB14Q9Y5E9 798 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 CXorf65A6NEN9 183 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 GPR42O15529 346 aa4.59□□□□□ -1.67
CSMD3-201ENST00000297405 SRPX2O60687 465 aaPredicted RBP4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms