RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 LAPTM4AQ15012 233 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 ZSWIM7Q19AV6 140 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 NHSL2Q5HYW2 709 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 TSPYL5Q86VY4 417 aaPredicted RBP16.97■□□□□ 0.31
CLN3-254ENST00000637050 GRAMD2AQ8IUY3 354 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 CMIPQ8IY22 773 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 PIK3C3Q8NEB9 887 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 OR52J3Q8NH60 311 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 NR4A3Q92570 626 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 NAF1Q96HR8 494 aaKnown RBP16.97■□□□□ 0.31
CLN3-254ENST00000637050 OSBPL11Q9BXB4 747 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 UBQLN4Q9NRR5 601 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 SMPD3Q9NY59 655 aaPredicted RBP16.97■□□□□ 0.31
CLN3-254ENST00000637050 ZNF292O60281 2723 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 TMEM200CA6NKL6 621 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 C21orf140B9A014 251 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 RAD1O60671 282 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 BCAS1O75363 584 aaPredicted RBP16.97■□□□□ 0.31
CLN3-254ENST00000637050 H1F0P07305 194 aaKnown RBP16.97■□□□□ 0.31
CLN3-254ENST00000637050 ABCD3P28288 659 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 SMIM11AP58511 58 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 RPS18P62269 152 aaKnown RBP16.97■□□□□ 0.31
CLN3-254ENST00000637050 RPS15P62841 145 aaKnown RBP16.97■□□□□ 0.31
CLN3-254ENST00000637050 GABREP78334 506 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 PLCXD2Q0VAA5 305 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 SSPNQ14714 243 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 EXT1Q16394 746 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 EXOC3L2Q2M3D2 409 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 KLHL26Q53HC5 615 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 PRR22Q8IZ63 422 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 ZNF614Q8N883 585 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 OR11G2Q8NGC1 345 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 OR5L2Q8NGL0 311 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 ELP5Q8TE02 316 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 OMA1Q96E52 524 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 GPR87Q9BY21 358 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 LIN28AQ9H9Z2 209 aaKnown RBP16.97■□□□□ 0.31
CLN3-254ENST00000637050 LRCH1Q9Y2L9 728 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 AP4B1Q9Y6B7 739 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 STMND1H3BQB6 276 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 DLL1O00548 723 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 REM1O75628 298 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 ZFAND5O76080 213 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 UTS2O95399 124 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 PNLIPRP2P54317 469 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 DNASE1L3Q13609 305 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 MICAQ29983 383 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 ANKRD34AQ69YU3 496 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 PLAG1Q6DJT9 500 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 FAHD1Q6P587 224 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 PPP1R32Q7Z5V6 425 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 GALNT15Q8N3T1 639 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 GIPC3Q8TF64 312 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 SLC35B4Q969S0 331 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 NACC2Q96BF6 587 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 RDH12Q96NR8 316 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 ADOQ96SZ5 270 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 MCHR1Q99705 422 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 FUZQ9BT04 418 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 FNDC11Q9BVV2 318 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 FLRT3Q9NZU0 649 aa16.96■□□□□ 0.31
CLN3-254ENST00000637050 TMEFF2Q9UIK5 374 aaPredicted RBP16.96■□□□□ 0.31
CLN3-254ENST00000637050 A0A1W2PRQ8 180 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 SERINC4A6NH21 518 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 CDRT15L2A8MXV6 281 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 AP3D1O14617 1153 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 DENRO43583 198 aaKnown RBP16.95■□□□□ 0.3
CLN3-254ENST00000637050 ABCB7O75027 752 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 CYP4B1P13584 511 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 TBXA2RP21731 343 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 IL12BP29460 328 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 KRT20P35900 424 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 ADH7P40394 386 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 RNF144AP50876 292 aaPredicted RBP16.95■□□□□ 0.3
CLN3-254ENST00000637050 DAPP51397 102 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 NRG3P56975 720 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 HOXC5Q00444 222 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 DGCR6Q14129 220 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 BTBD16Q32M84 506 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 C6orf52Q5T4I8 152 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 NDUFAF7Q7L592 441 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 TMPRSS7Q7RTY8 843 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 OFCC1Q8IZS5 231 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 ZNF527Q8NB42 609 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 M1APQ8TC57 530 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 CNOT9Q92600 299 aaKnown RBP16.95■□□□□ 0.3
CLN3-254ENST00000637050 ZNF570Q96NI8 536 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 ALPK1Q96QP1 1244 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 PSD2Q9BQI7 771 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 PRR14Q9BWN1 585 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 MAN2C1Q9NTJ4 1040 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 DNAJB12Q9NXW2 375 aaKnown RBP16.95■□□□□ 0.3
CLN3-254ENST00000637050 NINQ8N4C6 2090 aa16.95■□□□□ 0.3
CLN3-254ENST00000637050 ZFHX2Q9C0A1 2572 aaPredicted RBP16.95■□□□□ 0.3
CLN3-254ENST00000637050 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.94■□□□□ 0.3
CLN3-254ENST00000637050 HS6ST1O60243 411 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 FMO6PO60774 539 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 NADKO95544 446 aaPredicted RBP16.94■□□□□ 0.3
CLN3-254ENST00000637050 SNAP29O95721 258 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 OXSR1O95747 527 aaPredicted RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms