RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 REEP4Q9H6H4 257 aa16.57■□□□□ 0.24
CLN3-241ENST00000635861 LRTM1Q9HBL6 345 aa16.57■□□□□ 0.24
CLN3-241ENST00000635861 FANCFQ9NPI8 374 aa16.57■□□□□ 0.24
CLN3-241ENST00000635861 ACSS1Q9NUB1 689 aaPredicted RBP16.57■□□□□ 0.24
CLN3-241ENST00000635861 C7orf72A4D263 438 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 DEFB108AA8MXU0 73 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 AZIN1O14977 448 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 CHEK2O96017 543 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 PPP3CBP16298 524 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 RFX3P48380 749 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 KCNJ5P48544 419 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 CLDN20P56880 219 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 SIRPAP78324 504 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 HSPB3Q12988 150 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 SGCBQ16585 318 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.56■□□□□ 0.24
CLN3-241ENST00000635861 GRAMD1BQ3KR37 738 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 PRSS57Q6UWY2 283 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 ZNF551Q7Z340 670 aaPredicted RBP16.56■□□□□ 0.24
CLN3-241ENST00000635861 KRTAP1-3Q8IUG1 177 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 MISPQ8IVT2 679 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 CCDC63Q8NA47 563 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 ACTRT2Q8TDY3 377 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 ZBTB8AQ96BR9 441 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 MS4A4EQ96PG1 132 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 FAM107BQ9H098 131 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 GSX1Q9H4S2 264 aaPredicted RBP16.56■□□□□ 0.24
CLN3-241ENST00000635861 GLRX2Q9NS18 164 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 KLHL28Q9NXS3 571 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 C6orf203Q9P0P8 240 aaPredicted RBP16.56■□□□□ 0.24
CLN3-241ENST00000635861 EMC9Q9Y3B6 208 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 ROS1P08922 2347 aa16.56■□□□□ 0.24
CLN3-241ENST00000635861 H0YC42 278 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 COPEO14579 308 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 NDUFB5O43674 189 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 SMPD2O60906 423 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 INHBBP09529 407 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 TBXA2RP21731 343 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 CCKARP32238 428 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 ASMTP46597 345 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 TPD52P55327 224 aaPredicted RBP16.55■□□□□ 0.24
CLN3-241ENST00000635861 PDE7AQ13946 482 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 C20orf204Q6ZNR8 217 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 GGNQ86UU5 652 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 WDR75Q8IWA0 830 aaKnown RBP16.55■□□□□ 0.24
CLN3-241ENST00000635861 GTPBP8Q8N3Z3 284 aaPredicted RBP16.55■□□□□ 0.24
CLN3-241ENST00000635861 NUP43Q8NFH3 380 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 OR6K3Q8NGY3 331 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 FAM110BQ8TC76 370 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 PPCDCQ96CD2 204 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 GMPPAQ96IJ6 420 aaPredicted RBP16.55■□□□□ 0.24
CLN3-241ENST00000635861 TNFRSF12AQ9NP84 129 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 PLSCR4Q9NRQ2 329 aa16.55■□□□□ 0.24
CLN3-241ENST00000635861 A0A1W2PQD3 144 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 GXYLT2A0PJZ3 443 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 SIAH2O43255 324 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 OXSR1O95747 527 aaPredicted RBP16.54■□□□□ 0.24
CLN3-241ENST00000635861 IL11P20809 199 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 ADSLP30566 484 aaPredicted RBP16.54■□□□□ 0.24
CLN3-241ENST00000635861 SERPINB4P48594 390 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 MANFP55145 182 aaKnown RBP16.54■□□□□ 0.24
CLN3-241ENST00000635861 MLC1Q15049 377 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 ACKR1Q16570 336 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 APOOLQ6UXV4 268 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 Q6ZSR9 355 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 R3HCC1LQ7Z5L2 792 aaKnown RBP16.54■□□□□ 0.24
CLN3-241ENST00000635861 P3H2Q8IVL5 708 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 OR5M1Q8NGP8 315 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 PIK3R3Q92569 461 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 PIK3IP1Q96FE7 263 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 PRRG4Q9BZD6 226 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 EQTNQ9NQ60 294 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 MCTS1Q9ULC4 181 aaKnown RBP16.54■□□□□ 0.24
CLN3-241ENST00000635861 ZANQ9Y493 2812 aa16.54■□□□□ 0.24
CLN3-241ENST00000635861 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 EIF1AYO14602 144 aaKnown RBP16.53■□□□□ 0.24
CLN3-241ENST00000635861 SOX30O94993 753 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 IGKV1D-16P01601 117 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 SDC1P18827 310 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 RPL3P39023 403 aaKnown RBP16.53■□□□□ 0.24
CLN3-241ENST00000635861 RAC1P63000 192 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 SLC18A2Q05940 514 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 PDSS1Q5T2R2 415 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 CLEC6AQ6EIG7 209 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 LRIG3Q6UXM1 1119 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 ESPNLQ6ZVH7 1005 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 ZNF610Q8N9Z0 462 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 CIDECQ96AQ7 238 aaPredicted RBP16.53■□□□□ 0.24
CLN3-241ENST00000635861 GIMAP5Q96F15 307 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 MARK4Q96L34 752 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 OR10A4Q9H209 315 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 UBQLN4Q9NRR5 601 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 GIN1Q9NXP7 522 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 VDAC3Q9Y277 283 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 TLN2Q9Y4G6 2542 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 ADAMDEC1O15204 470 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 TRIM13O60858 407 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 TMCC2O75069 709 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 SS18L1O75177 396 aaPredicted RBP16.53■□□□□ 0.24
CLN3-241ENST00000635861 KCNK2O95069 426 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms