RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PEX11GQ96HA9 241 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 ABHD8Q96I13 439 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 RACGAP1Q9H0H5 632 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 NLGN3Q9NZ94 848 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 SRPX2O60687 465 aaPredicted RBP18.81■□□□□ 0.6
CLN3-230ENST00000568076 CDC123O75794 336 aaPredicted RBP18.81■□□□□ 0.6
CLN3-230ENST00000568076 PROS1P07225 676 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 RAB40BQ12829 278 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 MLLT11Q13015 90 aaPredicted RBP18.81■□□□□ 0.6
CLN3-230ENST00000568076 MINDY4Q4G0A6 757 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 KLHL22Q53GT1 634 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 C3orf38Q5JPI3 329 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 PFN4Q8NHR9 129 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 FGF20Q9NP95 211 aaPredicted RBP18.81■□□□□ 0.6
CLN3-230ENST00000568076 C20orf141Q9NUB4 165 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 CLDN16Q9Y5I7 305 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 CDH10Q9Y6N8 788 aa18.81■□□□□ 0.6
CLN3-230ENST00000568076 OR2W5A6NFC9 320 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 FUT1P19526 365 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 GABRA4P48169 554 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 EMDP50402 254 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 SLC13A2Q13183 592 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 ERV3-1Q14264 604 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 OXA1LQ15070 435 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 CCDC85BQ15834 202 aaPredicted RBP18.8■□□□□ 0.6
CLN3-230ENST00000568076 PGGHGQ32M88 737 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 AADACL4Q5VUY2 407 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 PHC2Q8IXK0 858 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 OR4N2Q8NGD1 307 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 TCTN2Q96GX1 697 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 SAMD8Q96LT4 415 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 CHRDQ9H2X0 955 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 NDUFB11Q9NX14 153 aa18.8■□□□□ 0.6
CLN3-230ENST00000568076 HRO43593 1189 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 CBFA2T3O75081 653 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 SLC2A10O95528 541 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 IGKV1D-16P01601 117 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 ZGLP1P0C6A0 271 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 RNH1P13489 461 aaKnown RBP18.79■□□□□ 0.6
CLN3-230ENST00000568076 MAKP20794 623 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 MTNR1AP48039 350 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 RFX3P48380 749 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 FXYD6P3P58550 94 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 LIPKQ5VXJ0 399 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 SHFQ7M4L6 423 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 GKN2Q86XP6 184 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 DRAXINQ8NBI3 349 aaPredicted RBP18.79■□□□□ 0.6
CLN3-230ENST00000568076 SNRNP27Q8WVK2 155 aaKnown RBP18.79■□□□□ 0.6
CLN3-230ENST00000568076 LMF2Q9BU23 707 aaKnown RBP18.79■□□□□ 0.6
CLN3-230ENST00000568076 CNPPD1Q9BV87 410 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 MROQ9BYG7 248 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 PRRG3Q9BZD7 231 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 DPH1Q9BZG8 443 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 FOLH1BQ9HBA9 442 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 POLE3Q9NRF9 147 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 QPCTLQ9NXS2 382 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 DTX4Q9Y2E6 619 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 LILRA5A6NI73 299 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 COQ9O75208 318 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 SSTR4P31391 388 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 PPP5CP53041 499 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 GFERP55789 205 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 C1DQ13901 141 aaKnown RBP18.79■□□□□ 0.6
CLN3-230ENST00000568076 UBXN2BQ14CS0 331 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 OR2G6Q5TZ20 316 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 TMEM239Q8WW34 195 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 PMM1Q92871 262 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 SLC38A3Q99624 504 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 FOXQ1Q9C009 403 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 UCK1Q9HA47 277 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 EXOSC4Q9NPD3 245 aaKnown RBP18.79■□□□□ 0.6
CLN3-230ENST00000568076 ATP13A2Q9NQ11 1180 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 DAPK2Q9UIK4 370 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 DOLKQ9UPQ8 538 aa18.79■□□□□ 0.6
CLN3-230ENST00000568076 FMO6PO60774 539 aa18.78■□□□□ 0.6
CLN3-230ENST00000568076 DRD5P21918 477 aa18.78■□□□□ 0.6
CLN3-230ENST00000568076 CD40LGP29965 261 aa18.78■□□□□ 0.6
CLN3-230ENST00000568076 BTG2P78543 158 aa18.78■□□□□ 0.6
CLN3-230ENST00000568076 IGLV3-21P80748 117 aaPredicted RBP18.78■□□□□ 0.6
CLN3-230ENST00000568076 KHDRBS1Q07666 443 aaKnown RBP eCLIP18.78■□□□□ 0.6
CLN3-230ENST00000568076 PDZK1Q5T2W1 519 aa18.78■□□□□ 0.6
CLN3-230ENST00000568076 C17orf82Q86X59 251 aaPredicted RBP18.78■□□□□ 0.6
CLN3-230ENST00000568076 CLDN22Q8N7P3 220 aa18.78■□□□□ 0.6
CLN3-230ENST00000568076 BBS1Q8NFJ9 593 aa18.78■□□□□ 0.6
CLN3-230ENST00000568076 TM9SF4Q92544 642 aa18.78■□□□□ 0.6
CLN3-230ENST00000568076 CNOT9Q92600 299 aaKnown RBP18.78■□□□□ 0.6
CLN3-230ENST00000568076 RIT1Q92963 219 aa18.78■□□□□ 0.6
CLN3-230ENST00000568076 ZNF285Q96NJ3 590 aa18.78■□□□□ 0.6
CLN3-230ENST00000568076 PHOX2BQ99453 314 aa18.78■□□□□ 0.6
CLN3-230ENST00000568076 SEC14L4Q9UDX3 406 aa18.78■□□□□ 0.6
CLN3-230ENST00000568076 TNRC18O15417 2968 aaPredicted RBP18.78■□□□□ 0.6
CLN3-230ENST00000568076 UNC119BA6NIH7 251 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 SNTNA6NMZ2 147 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 CTNSO60931 367 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 ADAM11O75078 769 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 PSMA1P25786 263 aaKnown RBP18.77■□□□□ 0.6
CLN3-230ENST00000568076 CDH11P55287 796 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 STX4Q12846 297 aa18.77■□□□□ 0.6
CLN3-230ENST00000568076 SMAD2Q15796 467 aaKnown RBP18.77■□□□□ 0.6
CLN3-230ENST00000568076 CHRDL2Q6WN34 429 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms