RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 GNPDA2Q8TDQ7 276 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 FGF22Q9HCT0 170 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 CBLCQ9ULV8 474 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 SLC27A6Q9Y2P4 619 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 MN1Q10571 1320 aaPredicted RBP14.03□□□□□ -0.16
USP28-214ENST00000545540 TP53BP1Q12888 1972 aaPredicted RBP14.03□□□□□ -0.16
USP28-214ENST00000545540 A0A1W2PQU0 124 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 ERGP11308 486 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 GABRA5P31644 462 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 PRR5P85299 388 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 SGCGQ13326 291 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TPBGQ13641 420 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 THOC7Q6I9Y2 204 aaKnown RBP14.03□□□□□ -0.16
USP28-214ENST00000545540 CDC73Q6P1J9 531 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 SLC48A1Q6P1K1 146 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 THSD4Q6ZMP0 1018 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 PLA2G2FQ9BZM2 168 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 MAT2BQ9NZL9 334 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TBC1D29Q9UFV1 150 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 WDR45Q9Y484 360 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 CEACAM5P06731 702 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 ZGLP1P0C6A0 271 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 DRD2P14416 443 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 MAKP20794 623 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 DDOSTP39656 456 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 ASAH1Q13510 395 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 EFR3AQ14156 821 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 NNATQ16517 81 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 PUS10Q3MIT2 529 aaKnown RBP14.02□□□□□ -0.16
USP28-214ENST00000545540 ADAMTSL4Q6UY14 1074 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 IZUMO1Q8IYV9 350 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 CLDN22Q8N7P3 220 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 WFIKKN2Q8TEU8 576 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 SPATA5L1Q9BVQ7 753 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 UBQLN3Q9H347 655 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 MRPS2Q9Y399 296 aaKnown RBP14.02□□□□□ -0.16
USP28-214ENST00000545540 STON1Q9Y6Q2 735 aa14.02□□□□□ -0.16
USP28-214ENST00000545540 A0A0G2JPF8 293 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 HNRNPCL2B2RXH8 293 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 HNRNPCL3B7ZW38 293 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 J3QLW9 94 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 LYRM1O43325 122 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 EMC8O43402 210 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 PROM1O43490 865 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 HNRNPCL4P0DMR1 293 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 TFPIP10646 304 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 ZNF19P17023 458 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 GJA4P35212 333 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 MAGEB1P43366 347 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 FZD5Q13467 585 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 ZNF765Q7L2R6 523 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 SAMD12Q8N8I0 201 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 BEST4Q8NFU0 473 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 OR2L5Q8NG80 312 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 OR13C2Q8NGS9 318 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 LCN9Q8WX39 176 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 DACT3Q96B18 629 aaPredicted RBP14.02□□□□□ -0.17
USP28-214ENST00000545540 WDFY2Q96P53 400 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 PINK1Q9BXM7 581 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 MRPL15Q9P015 296 aaKnown RBP14.02□□□□□ -0.17
USP28-214ENST00000545540 CXorf51AA0A1B0GTR3 108 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 LRRN3E7EW58 273 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 MEN1O00255 615 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 IMPA2O14732 288 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 NFATC1O95644 943 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 SAGP10523 405 aaPredicted RBP14.02□□□□□ -0.17
USP28-214ENST00000545540 GPLD1P80108 840 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 RPA4Q13156 261 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 ARHGAP19Q14CB8 494 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 AADACL4Q5VUY2 407 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 CXXC5Q7LFL8 322 aaKnown RBP14.02□□□□□ -0.17
USP28-214ENST00000545540 C17orf47Q8NEP4 570 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 SETD6Q8TBK2 473 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 GCDHQ92947 438 aaPredicted RBP14.02□□□□□ -0.17
USP28-214ENST00000545540 PHF21AQ96BD5 680 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 ASB16Q96NS5 453 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 LRRN3Q9H3W5 708 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 CDCP1Q9H5V8 836 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 PPP1R3EQ9H7J1 279 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 CES1P1Q9UKY3 287 aa14.02□□□□□ -0.17
USP28-214ENST00000545540 LOC105369274A0A096LPK9 316 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 PGGHGQ32M88 737 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 ZNF542PQ5EBM4 170 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 FRRS1Q6ZNA5 592 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 ZAR1Q86SH2 424 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 OR4N4Q8N0Y3 316 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 RNF170Q96K19 258 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 ZFP3Q96NJ6 502 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 ZNF559Q9BR84 538 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 MCOLN1Q9GZU1 580 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 HSPB11Q9Y547 144 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 A0A1W2PRG6 482 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 P2RX6O15547 441 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 EEF1E1O43324 174 aaKnown RBP14.01□□□□□ -0.17
USP28-214ENST00000545540 PAICSP22234 425 aaKnown RBP14.01□□□□□ -0.17
USP28-214ENST00000545540 TEAD1P28347 426 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 HTR2BP41595 481 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 GALK2Q01415 458 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 EOGTQ5NDL2 527 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 ZNF836Q6ZNA1 936 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms