RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 ENAMQ9NRM1 1142 aa12.81□□□□□ -0.36
VPS33A-208ENST00000543633 IMP3Q9NV31 184 aaKnown RBP12.81□□□□□ -0.36
VPS33A-208ENST00000543633 CHD7Q9P2D1 2997 aa12.81□□□□□ -0.36
VPS33A-208ENST00000543633 RABL2AQ9UBK7 228 aaPredicted RBP12.81□□□□□ -0.36
VPS33A-208ENST00000543633 RABL2BQ9UNT1 228 aa12.81□□□□□ -0.36
VPS33A-208ENST00000543633 ZNF443Q9Y2A4 671 aaPredicted RBP12.81□□□□□ -0.36
VPS33A-208ENST00000543633 GPR55Q9Y2T6 319 aaPredicted RBP12.81□□□□□ -0.36
VPS33A-208ENST00000543633 KCNE3Q9Y6H6 103 aa12.81□□□□□ -0.36
VPS33A-208ENST00000543633 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 A0A0G2JN53 185 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 LINC00862A6NCI5 91 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 ANKRD61A6NGH8 418 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 PGRMC2O15173 223 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 SHOXO15266 292 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 ERI3O43414 337 aaKnown RBP12.8□□□□□ -0.36
VPS33A-208ENST00000543633 PLPP2O43688 288 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 PLOD3O60568 738 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 SERPIND1P05546 499 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 THBS1P07996 1170 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 AHCYP23526 432 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 BCL6P41182 706 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 GPR4P46093 362 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 FAM214AQ32MH5 1076 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 ZBTB37Q5TC79 503 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 ABI3BPQ7Z7G0 1075 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 MEX3DQ86XN8 651 aaKnown RBP12.8□□□□□ -0.36
VPS33A-208ENST00000543633 CPOQ8IVL8 374 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 CCDC116Q8IYX3 515 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 C7orf61Q8IZ16 206 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 SAMD14Q8IZD0 417 aaPredicted RBP12.8□□□□□ -0.36
VPS33A-208ENST00000543633 BBS1Q8NFJ9 593 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 OR52L1Q8NGH7 329 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 SUN5Q8TC36 379 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 GIMAP5Q96F15 307 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 C16orf58Q96GQ5 468 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 ZNF681Q96N22 645 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 MS4A4EQ96PG1 132 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 QRSL1Q9H0R6 528 aaKnown RBP12.8□□□□□ -0.36
VPS33A-208ENST00000543633 GHITMQ9H3K2 345 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 ELF5Q9UKW6 265 aaPredicted RBP12.8□□□□□ -0.36
VPS33A-208ENST00000543633 ZFR2Q9UPR6 939 aaKnown RBP12.8□□□□□ -0.36
VPS33A-208ENST00000543633 PRKAB1Q9Y478 270 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 ATG4BQ9Y4P1 393 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 AUP1Q9Y679 476 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 STON1Q9Y6Q2 735 aa12.8□□□□□ -0.36
VPS33A-208ENST00000543633 TBC1D3KA0A087X1G2 549 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 TBC1D3BA6NDS4 549 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 TBC1D3FA6NER0 549 aaPredicted RBP12.79□□□□□ -0.36
VPS33A-208ENST00000543633 SLC22A31A6NKX4 558 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 C12orf71A8MTZ7 269 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 SOCS6O14544 535 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 AKR7A2O43488 359 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 CH25HO95992 272 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 MT-ND5P03915 603 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 ANXA3P12429 323 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 BTCP35070 178 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 CLCNKAP51800 687 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 ERVK-21P61565 698 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 DUSP2Q05923 314 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 MADCAM1Q13477 382 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 PLPP4Q5VZY2 271 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 TBC1D3GQ6DHY5 549 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 SFXN4Q6P4A7 337 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 LYPD8Q6UX82 237 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 NR2C2APQ86WQ0 139 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 C12orf40Q86WS4 652 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 HDDC3Q8N4P3 179 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 OR8K5Q8NH50 307 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 HGDQ93099 445 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 FCRL4Q96PJ5 515 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 GFM1Q96RP9 751 aaKnown RBP12.79□□□□□ -0.36
VPS33A-208ENST00000543633 NDC1Q9BTX1 674 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 MFRPQ9BY79 579 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 ABCG5Q9H222 651 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 MTHFD2LQ9H903 347 aaPredicted RBP12.79□□□□□ -0.36
VPS33A-208ENST00000543633 POLMQ9NP87 494 aaPredicted RBP12.79□□□□□ -0.36
VPS33A-208ENST00000543633 ATP13A2Q9NQ11 1180 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 EMC3Q9P0I2 261 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 NPFFR2Q9Y5X5 522 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 CSNK1G3Q9Y6M4 447 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 UNC119BA6NIH7 251 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 PPM1DO15297 605 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 FRS3O43559 492 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 THY1P04216 161 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 EIF4EP06730 217 aaKnown RBP12.79□□□□□ -0.36
VPS33A-208ENST00000543633 HNRNPA1P09651 372 aaKnown RBP eCLIP12.79□□□□□ -0.36
VPS33A-208ENST00000543633 MC3RP41968 323 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 AGERQ15109 404 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 CEP78Q5JTW2 689 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 FRRS1Q6ZNA5 592 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 PXKQ7Z7A4 578 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 HMGN2P46Q86SG4 172 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 RANBP3LQ86VV4 465 aaPredicted RBP12.79□□□□□ -0.36
VPS33A-208ENST00000543633 NRROSQ86YC3 692 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 SLC43A2Q8N370 569 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 LNX2Q8N448 690 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 OR51G2Q8NGK0 314 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 SLC2A12Q8TD20 617 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 ADAMTS15Q8TE58 950 aa12.79□□□□□ -0.36
VPS33A-208ENST00000543633 NXPE3Q969Y0 559 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms