RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 PEPDP12955 493 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 ARRB2P32121 409 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 SOX6P35712 828 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 PTDSS1P48651 473 aaKnown RBP4.75□□□□□ -1.65
CLIP1-217ENST00000543205 MAPK12P53778 367 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 CDH15P55291 814 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 WNT3P56703 355 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 FOXL2P58012 376 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 GMFBP60983 142 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 UFM1P61960 85 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 PMP22Q01453 160 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 CD69Q07108 199 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 SCN1BQ07699 218 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 ACSM2AQ08AH3 577 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 SF3A3Q12874 501 aaKnown RBP eCLIP4.75□□□□□ -1.65
CLIP1-217ENST00000543205 UGT3A2Q3SY77 523 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 ZNF766Q5HY98 468 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 ACSM2BQ68CK6 577 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 ANGPTL8Q6UXH0 198 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 COMMD6Q7Z4G1 85 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 ADCK1Q86TW2 530 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 GPR180Q86V85 440 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 C1orf52Q8N6N3 182 aaKnown RBP4.75□□□□□ -1.65
CLIP1-217ENST00000543205 POU5F2Q8N7G0 328 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 FAM47BQ8NA70 645 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 INTS12Q96CB8 462 aaKnown RBP4.75□□□□□ -1.65
CLIP1-217ENST00000543205 TMCO6Q96DC7 493 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 SAT2Q96F10 170 aaPredicted RBP4.75□□□□□ -1.65
CLIP1-217ENST00000543205 IP6K3Q96PC2 410 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 DIRC2Q96SL1 478 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 SORT1Q99523 831 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 CCT7Q99832 543 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 MAPKAP1Q9BPZ7 522 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 C20orf27Q9GZN8 174 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 WDR41Q9HAD4 459 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 MS4A12Q9NXJ0 267 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 PHF11Q9UIL8 331 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 MAGEL2Q9UJ55 1249 aa4.75□□□□□ -1.65
CLIP1-217ENST00000543205 CAB39Q9Y376 341 aaPredicted RBP4.75□□□□□ -1.65
CLIP1-217ENST00000543205 ACACAQ13085 2346 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 NBEAQ8NFP9 2946 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 DMXL2Q8TDJ6 3036 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 OR2W5A6NFC9 320 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 EIF4E1BA6NMX2 242 aaKnown RBP4.74□□□□□ -1.65
CLIP1-217ENST00000543205 IDSB3KWA1 339 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 K7ENP7 123 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 TMPRSS11DO60235 418 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 PCDH7O60245 1069 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 ALOX12BO75342 701 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 DIRAS3O95661 229 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 GRPP07492 148 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 UMODP07911 640 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 CYC1P08574 325 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 C8orf89P0DMQ9 161 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 WT1P19544 449 aaPredicted RBP4.74□□□□□ -1.65
CLIP1-217ENST00000543205 MMP11P24347 488 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 GBX2P52951 348 aaPredicted RBP4.74□□□□□ -1.65
CLIP1-217ENST00000543205 MFAP4P55083 255 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 TBL3Q12788 808 aaKnown RBP4.74□□□□□ -1.65
CLIP1-217ENST00000543205 CDC20Q12834 499 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 NSDHLQ15738 373 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 ATP1A1-AS1Q5TC04 95 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 ABLIM2Q6H8Q1 611 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 C19orf48Q6RUI8 117 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 RPTNQ6XPR3 784 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 RNF165Q6ZSG1 346 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 ZNF605Q86T29 641 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 CRLF3Q8IUI8 442 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 ZNF595Q8IYB9 648 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 FAM76AQ8TAV0 307 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 CKAP2Q8WWK9 683 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 NACC2Q96BF6 587 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 PPP3R2Q96LZ3 170 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 MAGEB18Q96M61 343 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 ADAD1Q96M93 576 aaKnown RBP4.74□□□□□ -1.65
CLIP1-217ENST00000543205 FAM210AQ96ND0 272 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 CSF3RQ99062 836 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 FAIM2Q9BWQ8 316 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 ZNF717Q9BY31 904 aaPredicted RBP4.74□□□□□ -1.65
CLIP1-217ENST00000543205 VN1R1Q9GZP7 353 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 TUBB1Q9H4B7 451 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 UNKLQ9H9P5 680 aaKnown RBP4.74□□□□□ -1.65
CLIP1-217ENST00000543205 LRTM1Q9HBL6 345 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 PRTFDC1Q9NRG1 225 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 LANCL2Q9NS86 450 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 C1orf109Q9NX04 203 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 GALNT8Q9NY28 637 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 KCMF1Q9P0J7 381 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 MYOTQ9UBF9 498 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 C19orf25Q9UFG5 118 aaPredicted RBP4.74□□□□□ -1.65
CLIP1-217ENST00000543205 HAO1Q9UJM8 370 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 PTGDR2Q9Y5Y4 395 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 HECTD1Q9ULT8 2610 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 AKAP13Q12802 2813 aa4.74□□□□□ -1.65
CLIP1-217ENST00000543205 URB1O60287 2271 aaKnown RBP4.74□□□□□ -1.65
CLIP1-217ENST00000543205 SH2D7A6NKC9 451 aaPredicted RBP4.73□□□□□ -1.65
CLIP1-217ENST00000543205 TRPC5OSA6NMA1 111 aa4.73□□□□□ -1.65
CLIP1-217ENST00000543205 A8MZ25 164 aa4.73□□□□□ -1.65
CLIP1-217ENST00000543205 SLCO1B7G3V0H7 640 aa4.73□□□□□ -1.65
CLIP1-217ENST00000543205 CYR61O00622 381 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms