RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 PDZK1P1A8MUH7 402 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 PRAC2D3DTV9 90 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 SDHDO14521 159 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 CALUO43852 315 aaPredicted RBP4.24□□□□□ -1.73
CD44-220ENST00000525688 SLC28A2O43868 658 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 TM7SF2O76062 418 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 MOCS2O96007 188 aaPredicted RBP4.24□□□□□ -1.73
CD44-220ENST00000525688 CALCAP01258 141 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 CRYGBP07316 175 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 T-ENOLP0DO92 83 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 DBTP11182 482 aaKnown RBP4.24□□□□□ -1.73
CD44-220ENST00000525688 CCL2P13500 99 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 IRF2P14316 349 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 AMD1P17707 334 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 NT5EP21589 574 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 PCMT1P22061 227 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 ADORA1P30542 326 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 CRATP43155 626 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 TNFRSF4P43489 277 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 CCL11P51671 97 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 PDX1P52945 283 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 STX17P56962 302 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 RGS8P57771 180 aaPredicted RBP4.24□□□□□ -1.73
CD44-220ENST00000525688 TIMM10P62072 90 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 BDH1Q02338 343 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 ELAVL3Q14576 367 aaKnown RBP4.24□□□□□ -1.73
CD44-220ENST00000525688 TRIP10Q15642 601 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 SNCBQ16143 134 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 RGS21Q2M5E4 152 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 CTU2Q2VPK5 515 aaKnown RBP4.24□□□□□ -1.73
CD44-220ENST00000525688 ZC2HC1CQ53FD0 456 aaPredicted RBP4.24□□□□□ -1.73
CD44-220ENST00000525688 LACTB2Q53H82 288 aaPredicted RBP4.24□□□□□ -1.73
CD44-220ENST00000525688 PAGE2BQ5JRK9 111 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 PDZK1Q5T2W1 519 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 NKAIN2Q5VXU1 208 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 WSCD1Q658N2 575 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 PYHIN1Q6K0P9 492 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 SLC39A4Q6P5W5 647 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 IL17RELQ6ZVW7 336 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 ZNF554Q86TJ5 538 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 MICU2Q8IYU8 434 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 LRRC34Q8IZ02 419 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 GTPBP8Q8N3Z3 284 aaPredicted RBP4.24□□□□□ -1.73
CD44-220ENST00000525688 LRRC17Q8N6Y2 441 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 OR2T12Q8NG77 320 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 GIPC3Q8TF64 312 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 ZNF473Q8WTR7 871 aaKnown RBP4.24□□□□□ -1.73
CD44-220ENST00000525688 SCFD1Q8WVM8 642 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 SECTM1Q8WVN6 248 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 HSD17B8Q92506 261 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 HAS2Q92819 552 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 WBP2Q969T9 261 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 STAMBPL1Q96FJ0 436 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 FOXN4Q96NZ1 517 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 ZNF317Q96PQ6 595 aaPredicted RBP4.24□□□□□ -1.73
CD44-220ENST00000525688 C9orf16Q9BUW7 83 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 MFFQ9GZY8 342 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 ANKRA2Q9H9E1 313 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 PELI2Q9HAT8 420 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 MYOZ2Q9NPC6 264 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 GSN-AS1Q9NRJ2 163 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 ZNF275Q9NSD4 429 aaPredicted RBP4.24□□□□□ -1.73
CD44-220ENST00000525688 EURLQ9NYK6 297 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 AHSPQ9NZD4 102 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 CDH9Q9ULB4 789 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 SLC7A7Q9UM01 511 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 B9D1Q9UPM9 204 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 WDR83OSQ9Y284 106 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 MAD1L1Q9Y6D9 718 aa4.24□□□□□ -1.73
CD44-220ENST00000525688 COL1A1P02452 1464 aaPredicted RBP4.24□□□□□ -1.73
CD44-220ENST00000525688 PLSCR5A0PG75 271 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 TMEM120BA0PK00 339 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 MEX3AA1L020 520 aaKnown RBP4.23□□□□□ -1.73
CD44-220ENST00000525688 METTL21EPA6NDL7 271 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 EEF2KO00418 725 aaKnown RBP4.23□□□□□ -1.73
CD44-220ENST00000525688 SLC22A2O15244 555 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 DUX1O43812 170 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 HCN1O60741 890 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 NDUFS6O75380 124 aaKnown RBP4.23□□□□□ -1.73
CD44-220ENST00000525688 GMNNO75496 209 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 CPNE6O95741 557 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 NUDT17P0C025 328 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 FGF5P12034 268 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 CEACAM1P13688 526 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 PLA2G2AP14555 144 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 GNSP15586 552 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 TCN1P20061 433 aaPredicted RBP4.23□□□□□ -1.73
CD44-220ENST00000525688 TPSB2P20231 275 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 MSH3P20585 1137 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 CYP3A5P20815 502 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 ZNF10P21506 573 aaPredicted RBP4.23□□□□□ -1.73
CD44-220ENST00000525688 UQCRC2P22695 453 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 MAT2AP31153 395 aaKnown RBP4.23□□□□□ -1.73
CD44-220ENST00000525688 CD80P33681 288 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 MNDAP41218 407 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 ARPC4P59998 168 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 VBP1P61758 197 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 SKP1P63208 163 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 DMC1Q14565 340 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 TGFBIQ15582 683 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms