RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 PLCZ1Q86YW0 608 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 PRR22Q8IZ63 422 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 OR5W2Q8NH69 310 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 DEDD2Q8WXF8 326 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 C7orf34Q96L11 122 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 OR7D2Q96RA2 312 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 INSM2Q96T92 566 aaPredicted RBP11.92□□□□□ -0.5
USP53-209ENST00000514665 SHROOM3Q8TF72 1996 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 TARM1B6A8C7 271 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 DISC1C4P0D8 188 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 HEXBP07686 556 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 FURINP09958 794 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 CD1EP15812 388 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 PXNP49023 591 aaPredicted RBP11.92□□□□□ -0.5
USP53-209ENST00000514665 PTH2RP49190 550 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 ART1P52961 327 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 PFN3P60673 137 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 ACVR1Q04771 509 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 POU4F2Q12837 409 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 ADPRMQ3LIE5 342 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 PUS10Q3MIT2 529 aaKnown RBP11.92□□□□□ -0.5
USP53-209ENST00000514665 ACSM3Q53FZ2 586 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 CCSAPQ6IQ19 270 aaPredicted RBP11.92□□□□□ -0.5
USP53-209ENST00000514665 WASH2PQ6VEQ5 465 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 ENTHD1Q8IYW4 607 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 NXPE2Q96DL1 559 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 HRASLS5Q96KN8 279 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 P2RY12Q9H244 342 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 CD93Q9NPY3 652 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 POT1Q9NUX5 634 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 ACTR10Q9NZ32 417 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 PSORS1C1Q9UIG5 152 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 PPT2Q9UMR5 302 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 RASD1Q9Y272 281 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 TNRC6CQ9HCJ0 1690 aaKnown RBP11.92□□□□□ -0.5
USP53-209ENST00000514665 TVP23AA6NH52 213 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 HNRNPA2B1P22626 353 aaKnown RBP11.92□□□□□ -0.5
USP53-209ENST00000514665 CTBSQ01459 385 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 IRF4Q15306 451 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 RAB30Q15771 203 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 ENTPD8Q5MY95 495 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 AGAP6Q5VW22 663 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 EIF5AL1Q6IS14 154 aaKnown RBP11.92□□□□□ -0.5
USP53-209ENST00000514665 IL20RBQ6UXL0 311 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 DGLUCYQ7Z3D6 616 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 SGCDQ92629 289 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 AGAP4Q96P64 663 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 KATNBL1Q9H079 304 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 RLIMQ9NVW2 624 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 COQ3Q9NZJ6 369 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 NDUFAF4Q9P032 175 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 MGAT4AQ9UM21 535 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 HTR3EA5X5Y0 456 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 LIPAP38571 399 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 TM4SF4P48230 202 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 MGAT3Q09327 533 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 CDNFQ49AH0 187 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 SPIN3Q5JUX0 258 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 TMEM31Q5JXX7 168 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 TCEAL6Q6IPX3 200 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 GALNT11Q8NCW6 608 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 ASB12Q8WXK4 309 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 THRSPQ92748 146 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 ZNF350Q9GZX5 532 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 ZNF700Q9H0M5 742 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 TMEM185BQ9H7F4 350 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 PCDHGB2Q9Y5G2 931 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 ANKRD28O15084 1053 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 SLC16A6O15403 523 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 MAOBP27338 520 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 PITPNBP48739 271 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 ERVK-25P63136 954 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 SQSTM1Q13501 440 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 ZMYND11Q15326 602 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 NKAPLQ5M9Q1 402 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 BEST4Q8NFU0 473 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 CHPT1Q8WUD6 406 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 GAL3ST3Q96A11 431 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 ARRDC3Q96B67 414 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 HYLS1Q96M11 299 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 DEFB126Q9BYW3 111 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 OCEL1Q9H607 264 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 PLAC1Q9HBJ0 212 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 TOGARAM1Q9Y4F4 1720 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 CDK5RAP2Q96SN8 1893 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 MTRF1O75570 445 aaKnown RBP11.91□□□□□ -0.5
USP53-209ENST00000514665 RP2O75695 350 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 SEC14L2O76054 403 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 PGCP20142 388 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 ISL1P61371 349 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 SOWAHCQ53LP3 525 aaPredicted RBP11.91□□□□□ -0.5
USP53-209ENST00000514665 STEAP3Q658P3 488 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 PYHIN1Q6K0P9 492 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 ZNF852Q6ZMS4 543 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 ZER1Q7Z7L7 766 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 SERINC2Q96SA4 455 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 ACTR6Q9GZN1 396 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 MED20Q9H944 212 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 SLC25A37Q9NYZ2 338 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 B3GNT3Q9Y2A9 372 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms