RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 TOR1AIP2Q8NFQ8 470 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 PHOSPHO1Q8TCT1 267 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 SGTBQ96EQ0 304 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 C4orf36Q96KX1 117 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 GRHPRQ9UBQ7 328 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 MUTYHQ9UIF7 546 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 KLHL21Q9UJP4 597 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 ADAM29Q9UKF5 820 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 FER1L6Q2WGJ9 1857 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 KCNE1BA0A087WTH5 132 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 NPIPA5A0A0B4J1W7 369 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 NPIPA7E9PJI5 369 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 RNF13O43567 381 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 SLC43A1O75387 559 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 PAHP00439 452 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 NPIPA8P0DM63 369 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 AKT2P31751 481 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 CDK3Q00526 305 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 PRDX1Q06830 199 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 ALG10BQ5I7T1 473 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 PRAMEF17Q5VTA0 474 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 GARNL3Q5VVW2 1013 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 ACSM5Q6NUN0 579 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 BEST4Q8NFU0 473 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 OR6N2Q8NGY6 317 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 COQ10AQ96MF6 247 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 C19orf43Q9BQ61 176 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF559Q9BR84 538 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 NIPAL2Q9H841 368 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 A8MVJ9 347 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 PRKRAO75569 313 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 SNAPC5O75971 98 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 CSTAP01040 98 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 GYPBP06028 91 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 UCHL1P09936 223 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 CXCR1P25024 350 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 IL12BP29460 328 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 ZFP36L2P47974 494 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 DEFB103AP81534 67 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 HYAL2Q12891 473 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 EFR3AQ14156 821 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 POU4F3Q15319 338 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 PUS10Q3MIT2 529 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 SAXO2Q658L1 398 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF527Q8NB42 609 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 IL17RDQ8NFM7 739 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 OR5K2Q8NHB8 316 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 APH1BQ8WW43 257 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 AMDHD1Q96NU7 426 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 NECTIN4Q96NY8 510 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 ARL6Q9H0F7 186 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 IFT46Q9NQC8 304 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 USP36Q9P275 1121 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 TRBV5-3A0A0A0MS03 114 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 AK1P00568 194 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 HNRNPA1P09651 372 aaKnown RBP eCLIP7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 CD22P20273 847 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 GAS6Q14393 721 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 NNATQ16517 81 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 CCNJQ5T5M9 372 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 PRICKLE2Q7Z3G6 844 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 GPER1Q99527 375 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 BTBD2Q9BX70 525 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 ALOXE3Q9BYJ1 711 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 EPHX3Q9H6B9 360 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 MED20Q9H944 212 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 KLHL9Q9P2J3 617 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 OR2AT4A6NND4 320 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 A8MUA0 341 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 FABP7O15540 132 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 AIFM1O95831 613 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 GIMD1P0DJR0 217 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 GTF2F2P13984 249 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 SHC1P29353 583 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 SSTR2P30874 369 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 HOXC8P31273 242 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 CST6Q15828 149 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 HBMQ6B0K9 141 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 LAS2Q8IYD9 372 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 PRSS58Q8IYP2 241 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 JAGN1Q8N5M9 183 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 GATSQ8NAP1 163 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 BPIFA2Q96DR5 249 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 HHATLQ9HCP6 504 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 SRA1Q9HD15 236 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 FZD3Q9NPG1 666 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 MED17Q9NVC6 651 aa7.89□□□□□ -1.15
LIMCH1-216ENST00000512820 TMEM129A0AVI4 362 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 OR6C74A6NCV1 312 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 B4DXG7 233 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 WASH3PC4AMC7 463 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 PSMD9O00233 223 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 HMGN4O00479 90 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 SCDO00767 359 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 SOCS6O14544 535 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 DPM1O60762 260 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 PPM1BO75688 479 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms