RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 NDUFV2P19404 249 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 HTR1FP30939 366 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 HOXD12P35452 270 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 DUSP8Q13202 625 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 DSG2Q14126 1118 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 KIR2DS3Q14952 304 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 BCL2A1Q16548 175 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 FHL5Q5TD97 284 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 ZNF544Q6NX49 715 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 XKRXQ6PP77 449 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 CPOQ8IVL8 374 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 TMEM52Q8NDY8 209 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 PFN4Q8NHR9 129 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 ZFPM2Q8WW38 1151 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 SPRYD4Q8WW59 207 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-204ENST00000501271 SLC22A18Q96BI1 424 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 ARSGQ96EG1 525 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 BMFQ96LC9 184 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 HDHD5Q9BXW7 423 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 DPH1Q9BZG8 443 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 ZNF350Q9GZX5 532 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 MMP28Q9H239 520 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 TBC1D17Q9HA65 648 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 ADAP2Q9NPF8 381 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 MED17Q9NVC6 651 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 FBXO34Q9NWN3 711 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 KCNE5Q9UJ90 142 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 PCOLCE2Q9UKZ9 415 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 GSTK1Q9Y2Q3 226 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 GRIP1Q9Y3R0 1128 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 SLC22A7Q9Y694 548 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 ZC3H12DA2A288 527 aaKnown RBP9.17□□□□□ -0.94
CLIP1-204ENST00000501271 PEX12O00623 359 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 DVL2O14641 736 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 CASKO14936 926 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 TFECO14948 347 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-204ENST00000501271 POLR1CO15160 346 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-204ENST00000501271 TMCC2O75069 709 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 RASGRP1O95267 797 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 KLF8O95600 359 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-204ENST00000501271 EGFP01133 1207 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 CELP19835 753 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 DAB2P98082 770 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 IFITM2Q01629 132 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 SCN1BQ07699 218 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 ASAH1Q13510 395 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 SF3B4Q15427 424 aaKnown RBP eCLIP9.17□□□□□ -0.94
CLIP1-204ENST00000501271 TMEM31Q5JXX7 168 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 ATAD3CQ5T2N8 411 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 PPP2R2DQ66LE6 453 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 USP53Q70EK8 1073 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 RAB43Q86YS6 212 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 KLHL36Q8N4N3 616 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 OTULINQ96BN8 352 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 WDR92Q96MX6 357 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 SECISBP2Q96T21 854 aaKnown RBP9.17□□□□□ -0.94
CLIP1-204ENST00000501271 TEX12Q9BXU0 123 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 TWSG1Q9GZX9 223 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 ENKD1Q9H0I2 346 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 C11orf54Q9H0W9 315 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-204ENST00000501271 UBQLN3Q9H347 655 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 NEK6Q9HC98 313 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 C20orf141Q9NUB4 165 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 NLGN3Q9NZ94 848 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 PTGFRNQ9P2B2 879 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 COMMD3Q9UBI1 195 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 ZNF223Q9UK11 482 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-204ENST00000501271 PILRAQ9UKJ1 303 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 ZNF232Q9UNY5 417 aa9.17□□□□□ -0.94
CLIP1-204ENST00000501271 LRRC72A6NJI9 287 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 J3QRE1 110 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 GABRPO00591 440 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 TNFSF14O43557 240 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 AKAP8O43823 692 aaKnown RBP9.16□□□□□ -0.94
CLIP1-204ENST00000501271 FGF17O60258 216 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 THBS1P07996 1170 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 HOXC4P09017 264 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-204ENST00000501271 PVRP15151 417 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 MAKP20794 623 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 RPS4Y1P22090 263 aaKnown RBP9.16□□□□□ -0.94
CLIP1-204ENST00000501271 ACSL1P33121 698 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 RCVRNP35243 200 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 TFF2Q03403 129 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 GPR18Q14330 331 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 TMEM44Q2T9K0 475 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 EIPR1Q53HC9 387 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 PYDC2Q56P42 97 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 EOGTQ5NDL2 527 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 DCST2Q5T1A1 773 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 PDZK1Q5T2W1 519 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 MRPL2Q5T653 305 aaKnown RBP9.16□□□□□ -0.94
CLIP1-204ENST00000501271 SDE2Q6IQ49 451 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 PLBD1Q6P4A8 553 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 FIGLAQ6QHK4 219 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 CXXC5Q7LFL8 322 aaKnown RBP9.16□□□□□ -0.94
CLIP1-204ENST00000501271 MARCH9Q86YJ5 346 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 KLBQ86Z14 1044 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 SAMD14Q8IZD0 417 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-204ENST00000501271 ZNF619Q8N2I2 560 aa9.16□□□□□ -0.94
CLIP1-204ENST00000501271 ATP6V1C2Q8NEY4 427 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms