RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CNIH4Q9P003 139 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 MAGEL2Q9UJ55 1249 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 CNOT11Q9UKZ1 510 aaKnown RBP11.22□□□□□ -0.61
SDC1-206ENST00000482879 ABCG2Q9UNQ0 655 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 IFT52Q9Y366 437 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 DTNAQ9Y4J8 743 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 SNX13Q9Y5W8 968 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 GPC6Q9Y625 555 aaPredicted RBP11.22□□□□□ -0.61
SDC1-206ENST00000482879 LAMA5O15230 3695 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 DSPP15924 2871 aaKnown RBP11.21□□□□□ -0.61
SDC1-206ENST00000482879 PIEZO2Q9H5I5 2752 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 CENPVL1A0A0U1RR11 272 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 ALG1L2C9J202 215 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 ARPC2O15144 300 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 SCO2O43819 266 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 SLC25A12O75746 678 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 MFN2O95140 757 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 STAMBPO95630 424 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 IFNA14P01570 189 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 OPN1SWP03999 348 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 PDGFAP04085 211 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 SP1P08047 785 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 PABPC4LP0CB38 370 aaKnown RBP11.21□□□□□ -0.61
SDC1-206ENST00000482879 RPS4Y1P22090 263 aaKnown RBP11.21□□□□□ -0.61
SDC1-206ENST00000482879 TNFSF10P50591 281 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 KCNJ2P63252 427 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 MS4A2Q01362 244 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 SNTA1Q13424 505 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 LARS2Q15031 903 aaKnown RBP11.21□□□□□ -0.61
SDC1-206ENST00000482879 LRRC23Q53EV4 343 aaPredicted RBP11.21□□□□□ -0.61
SDC1-206ENST00000482879 ZNF311Q5JNZ3 666 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 PRAMEF20Q5VT98 475 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 SLC25A25Q6KCM7 469 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 TMEM81Q6P7N7 255 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 APOOLQ6UXV4 268 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 VRK2Q86Y07 508 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 ARMC8Q8IUR7 673 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 GATSQ8NAP1 163 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 PSD4Q8NDX1 1056 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 C9orf43Q8TAL5 461 aaPredicted RBP11.21□□□□□ -0.61
SDC1-206ENST00000482879 SLC26A7Q8TE54 656 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 WDR60Q8WVS4 1066 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 OIT3Q8WWZ8 545 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 TAMM41Q96BW9 452 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 C5orf34Q96MH7 638 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 ADNPQ9H2P0 1102 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 MUC13Q9H3R2 512 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 KLHL1Q9NR64 748 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.21□□□□□ -0.61
SDC1-206ENST00000482879 ACTR3BQ9P1U1 418 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 SEC14L3Q9UDX4 400 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 SLC7A8Q9UHI5 535 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 ZNF443Q9Y2A4 671 aaPredicted RBP11.21□□□□□ -0.61
SDC1-206ENST00000482879 TP53TG5Q9Y2B4 290 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 CSAG2Q9Y5P2 127 aa11.21□□□□□ -0.61
SDC1-206ENST00000482879 CFAP47Q6ZTR5 3102 aa11.21□□□□□ -0.62
SDC1-206ENST00000482879 USP24Q9UPU5 2620 aa11.21□□□□□ -0.62
SDC1-206ENST00000482879 TRAV17A0A0B4J275 112 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 A0A1W2PQD3 144 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 ANKRD33BA6NCL7 494 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 C2orf72A6NCS6 295 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 SERINC4A6NH21 518 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 G3V3Y1 287 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 H3BNH8 94 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 GTPBP1O00178 669 aaKnown RBP11.2□□□□□ -0.62
SDC1-206ENST00000482879 NDUFB5O43674 189 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 DPM1O60762 260 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 ANGPTL1O95841 491 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 THBS1P07996 1170 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 CNR1P21554 472 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 PTGDSP41222 190 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 CD97P48960 835 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 KCNJ10P78508 379 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 DMTNQ08495 405 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 TRAP1Q12931 704 aaKnown RBP11.2□□□□□ -0.62
SDC1-206ENST00000482879 FGFBP1Q14512 234 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 LIN52Q52LA3 116 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 CYBRD1Q53TN4 286 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 ZNF766Q5HY98 468 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 TBCELQ5QJ74 424 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 SLC30A6Q6NXT4 461 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 CYP2R1Q6VVX0 501 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 ASB18Q6ZVZ8 466 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 ZNF771Q7L3S4 317 aaPredicted RBP11.2□□□□□ -0.62
SDC1-206ENST00000482879 DHFR2Q86XF0 187 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 SMYD1Q8NB12 490 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 PHOSPHO1Q8TCT1 267 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 RNF138Q8WVD3 245 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 UTP4Q969X6 686 aaKnown RBP11.2□□□□□ -0.62
SDC1-206ENST00000482879 ASB9Q96DX5 294 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 NSMCE2Q96MF7 247 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 DOHHQ9BU89 302 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 OSBPL11Q9BXB4 747 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 ANGPTL4Q9BY76 406 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 HES7Q9BYE0 225 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 RTN4RQ9BZR6 473 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 GORASP2Q9H8Y8 452 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 PROK2Q9HC23 129 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 GALNT9Q9HCQ5 603 aa11.2□□□□□ -0.62
SDC1-206ENST00000482879 ZNF71Q9NQZ8 489 aaPredicted RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms