RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 C3orf30Q96M34 536 aa14.68□□□□□ -0.06
COL9A3-208ENST00000469802 ALPK1Q96QP1 1244 aa14.68□□□□□ -0.06
COL9A3-208ENST00000469802 PINK1Q9BXM7 581 aa14.68□□□□□ -0.06
COL9A3-208ENST00000469802 PLEKHF2Q9H8W4 249 aa14.68□□□□□ -0.06
COL9A3-208ENST00000469802 HHATLQ9HCP6 504 aa14.68□□□□□ -0.06
COL9A3-208ENST00000469802 TESMINQ9Y4I5 508 aa14.68□□□□□ -0.06
COL9A3-208ENST00000469802 AP4B1Q9Y6B7 739 aa14.68□□□□□ -0.06
COL9A3-208ENST00000469802 VPS13CQ709C8 3753 aa14.68□□□□□ -0.06
COL9A3-208ENST00000469802 ZFHX3Q15911 3703 aa14.68□□□□□ -0.06
COL9A3-208ENST00000469802 A0A1W2PPR1 153 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 C7orf72A4D263 438 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 ATE1O95260 518 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 CGAP01215 116 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 DNASE1P24855 282 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 MAPK1P28482 360 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 CCKARP32238 428 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 RPL3P39023 403 aaKnown RBP14.67□□□□□ -0.06
COL9A3-208ENST00000469802 PRKAG1P54619 331 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 IFFO1Q0D2I5 559 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 C6orf136Q5SQH8 315 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 WDR93Q6P2C0 686 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 CHMP1BQ7LBR1 199 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 SZRD1Q7Z422 152 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 BTLAQ7Z6A9 289 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 OR7A2PQ8NGA2 310 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 FNDC9Q8TBE3 224 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 AGR3Q8TD06 166 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 SMPDL3BQ92485 455 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 C16orf58Q96GQ5 468 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 STACQ99469 402 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 TMEM109Q9BVC6 243 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 TMUB1Q9BVT8 246 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 DUSP22Q9NRW4 184 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 FBXO34Q9NWN3 711 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 ZDHHC2Q9UIJ5 367 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 EDARQ9UNE0 448 aa14.67□□□□□ -0.06
COL9A3-208ENST00000469802 ACANP16112 2415 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 A0A087WZY1 265 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 A0A1W2PQD3 144 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 SHISA8B8ZZ34 492 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 NDUFB5O43674 189 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 PEX11AO75192 247 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 HSPA4LO95757 839 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 RAF1P04049 648 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 HMGN2P05204 90 aaKnown RBP14.66□□□□□ -0.06
COL9A3-208ENST00000469802 BPGMP07738 259 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 ALOX5P09917 674 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 LAMP1P11279 417 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 DDX5P17844 614 aaKnown RBP14.66□□□□□ -0.06
COL9A3-208ENST00000469802 PSMA4P25789 261 aaKnown RBP14.66□□□□□ -0.06
COL9A3-208ENST00000469802 CPOXP36551 454 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 PRIM2P49643 509 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 PON3Q15166 354 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 PLPPR5Q32ZL2 321 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 ATP6AP1LQ52LC2 224 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 FIGNL1Q6PIW4 674 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 ZNF474Q6S9Z5 364 aaPredicted RBP14.66□□□□□ -0.06
COL9A3-208ENST00000469802 CAMKMTQ7Z624 323 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 TGIF2LYQ8IUE0 185 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 GTPBP8Q8N3Z3 284 aaPredicted RBP14.66□□□□□ -0.06
COL9A3-208ENST00000469802 COX18Q8N8Q8 333 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 CNEP1R1Q8N9A8 125 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 ACTRT2Q8TDY3 377 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 OTUB1Q96FW1 271 aaPredicted RBP14.66□□□□□ -0.06
COL9A3-208ENST00000469802 ADGRG7Q96K78 797 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 NPAS1Q99742 590 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 YIPF4Q9BSR8 244 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 C1orf50Q9BV19 199 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 BTBD2Q9BX70 525 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 UBQLN4Q9NRR5 601 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 ZCCHC3Q9NUD5 404 aaKnown RBP14.66□□□□□ -0.06
COL9A3-208ENST00000469802 GIN1Q9NXP7 522 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 VDAC3Q9Y277 283 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 HEATR5AQ86XA9 2040 aa14.66□□□□□ -0.06
COL9A3-208ENST00000469802 SKAP2O75563 359 aaPredicted RBP14.65□□□□□ -0.06
COL9A3-208ENST00000469802 LYPLA1O75608 230 aaPredicted RBP14.65□□□□□ -0.06
COL9A3-208ENST00000469802 SMNDC1O75940 238 aaKnown RBP eCLIP14.65□□□□□ -0.063e-6■■■■□ 26.7
COL9A3-208ENST00000469802 AQP8O94778 261 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 CD8BP10966 210 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 FCGR2AP12318 317 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 SERPINB4P48594 390 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 C21orf58P58505 322 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 RPS3AP61247 264 aaKnown RBP14.65□□□□□ -0.06
COL9A3-208ENST00000469802 FAM27E3Q08E93 113 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 FGFBP1Q14512 234 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 LASP1Q14847 261 aaKnown RBP14.65□□□□□ -0.06
COL9A3-208ENST00000469802 CD226Q15762 336 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 CTU2Q2VPK5 515 aaKnown RBP14.65□□□□□ -0.06
COL9A3-208ENST00000469802 CCNJQ5T5M9 372 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 MISPQ8IVT2 679 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 RIMKLAQ8IXN7 391 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 MREGQ8N565 214 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 CHDHQ8NE62 594 aaPredicted RBP14.65□□□□□ -0.06
COL9A3-208ENST00000469802 ZBTB8AQ96BR9 441 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 COQ8BQ96D53 544 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 PGM2Q96G03 612 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 KLHDC3Q9BQ90 382 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 OPN3Q9H1Y3 402 aaPredicted RBP14.65□□□□□ -0.06
COL9A3-208ENST00000469802 PIGUQ9H490 435 aa14.65□□□□□ -0.06
COL9A3-208ENST00000469802 A0A1W2PRB8 838 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms