RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 PCNX3Q9H6A9 2034 aa17.08■□□□□ 0.32
VARS-220ENST00000461874 SEC14L5O43304 696 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 GMFGO60234 142 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 HMGN2P05204 90 aaKnown RBP17.07■□□□□ 0.32
VARS-220ENST00000461874 SERPINB4P48594 390 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 OCRLQ01968 901 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 KRT71Q3SY84 523 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 NUDCD3Q8IVD9 361 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 NATD1Q8N6N6 113 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 COX18Q8N8Q8 333 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 PSMA8Q8TAA3 256 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 NUDT8Q8WV74 236 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 OR5P2Q8WZ92 322 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 COQ8BQ96D53 544 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 STARD4Q96DR4 205 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 OTUB1Q96FW1 271 aaPredicted RBP17.07■□□□□ 0.32
VARS-220ENST00000461874 DACH2Q96NX9 599 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 BTBD2Q9BX70 525 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 PINK1Q9BXM7 581 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 PARD6BQ9BYG5 372 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 UBQLN4Q9NRR5 601 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 DUSP22Q9NRW4 184 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 ATAD3AQ9NVI7 634 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 GIN1Q9NXP7 522 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 ZNF175Q9Y473 711 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 SNX8Q9Y5X2 465 aa17.07■□□□□ 0.32
VARS-220ENST00000461874 MED13LQ71F56 2210 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 ITPR3Q14573 2671 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 A0A087WZY1 265 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 SHISA8B8ZZ34 492 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 MSTNO14793 375 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 CTIFO43310 598 aaKnown RBP17.06■□□□□ 0.32
VARS-220ENST00000461874 HSPA4LO95757 839 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 PRPS1L1P21108 318 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 POU6F2P78424 691 aaPredicted RBP17.06■□□□□ 0.32
VARS-220ENST00000461874 ZNF844Q08AG5 666 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 LASP1Q14847 261 aaKnown RBP17.06■□□□□ 0.32
VARS-220ENST00000461874 CCNJQ5T5M9 372 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 VWA1Q6PCB0 445 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 RIMKLAQ8IXN7 391 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 KRTCAP2Q8N6L1 136 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 METTL25Q8N6Q8 603 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 GATSQ8NAP1 163 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 JADE3Q92613 823 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 TUBGCP3Q96CW5 907 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 STACQ99469 402 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 PRPF18Q99633 342 aaKnown RBP17.06■□□□□ 0.32
VARS-220ENST00000461874 FOXC2Q99958 501 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 PIGUQ9H490 435 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 CCM2LQ9NUG4 571 aaPredicted RBP17.06■□□□□ 0.32
VARS-220ENST00000461874 VDAC3Q9Y277 283 aa17.06■□□□□ 0.32
VARS-220ENST00000461874 PRRC2AP48634 2157 aaKnown RBP17.06■□□□□ 0.32
VARS-220ENST00000461874 HRNRQ86YZ3 2850 aaPredicted RBP17.06■□□□□ 0.32
VARS-220ENST00000461874 RGS16O15492 202 aaPredicted RBP17.05■□□□□ 0.32
VARS-220ENST00000461874 GOSR1O95249 250 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 HPGDP15428 266 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 ZNF17P17021 662 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 KIR2DL2P43627 348 aaPredicted RBP17.05■□□□□ 0.32
VARS-220ENST00000461874 CCT3P49368 545 aaKnown RBP17.05■□□□□ 0.32
VARS-220ENST00000461874 PCYT1AP49585 367 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 RPS3AP61247 264 aaKnown RBP17.05■□□□□ 0.32
VARS-220ENST00000461874 LSM12Q3MHD2 195 aaKnown RBP17.05■□□□□ 0.32
VARS-220ENST00000461874 CDC73Q6P1J9 531 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 BTLAQ7Z6A9 289 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 GGNQ86UU5 652 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 MISPQ8IVT2 679 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 GTPBP8Q8N3Z3 284 aaPredicted RBP17.05■□□□□ 0.32
VARS-220ENST00000461874 CNEP1R1Q8N9A8 125 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 OR56A1Q8NGH5 318 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 PPP1R14CQ8TAE6 165 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 FNDC9Q8TBE3 224 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 ACTRT2Q8TDY3 377 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 SMPDL3BQ92485 455 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 CDS1Q92903 461 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 ZNF845Q96IR2 970 aaPredicted RBP17.05■□□□□ 0.32
VARS-220ENST00000461874 PKNOX2Q96KN3 472 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 CXXC4Q9H2H0 198 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 CXorf36Q9H7Y0 433 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 RNF122Q9H9V4 155 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 STOML1Q9UBI4 398 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 EDARQ9UNE0 448 aa17.05■□□□□ 0.32
VARS-220ENST00000461874 EIF3LQ9Y262 564 aaKnown RBP17.05■□□□□ 0.32
VARS-220ENST00000461874 A0A1W2PQD3 144 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 WDR91A4D1P6 747 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 SH3D21A4FU49 640 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 SCDO00767 359 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 BIRC5O15392 142 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 ITM2AO43736 263 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 SMNDC1O75940 238 aaKnown RBP eCLIP17.04■□□□□ 0.324e-7■■■□□ 17.2
VARS-220ENST00000461874 C6orf47O95873 294 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 SERPINE1P05121 402 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 G6PDP11413 515 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 C21orf58P58505 322 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 EMX2Q04743 252 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 PON3Q15166 354 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 FBXW10Q5XX13 1052 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 CHMP6Q96FZ7 201 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 PGM2Q96G03 612 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 ZIM3Q96PE6 472 aa17.04■□□□□ 0.32
VARS-220ENST00000461874 ACTRT3Q9BYD9 372 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms