RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 EIF3KQ9UBQ5 218 aaKnown RBP17.36■□□□□ 0.37
USP48-204ENST00000400301 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.36■□□□□ 0.37
USP48-204ENST00000400301 WDR90Q96KV7 1748 aa17.36■□□□□ 0.37
USP48-204ENST00000400301 MYO16Q9Y6X6 1858 aa17.36■□□□□ 0.37
USP48-204ENST00000400301 HYKKA2RU49 373 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 MEIOCA2RUB1 952 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 HTR3EA5X5Y0 456 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 SYT5O00445 386 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 LYRM1O43325 122 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 PPM1BO75688 479 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 GYPBP06028 91 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 F3P13726 295 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 IGFALSP35858 605 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 SLC1A3P43003 542 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 EPHA5P54756 1037 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 RAB30Q15771 203 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 FXNQ16595 210 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 SYT14P1Q58G82 188 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 ACSM5Q6NUN0 579 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 ANKRD53Q8N9V6 530 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 CREB3L4Q8TEY5 395 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 ZMYND19Q96E35 227 aaPredicted RBP17.35■□□□□ 0.37
USP48-204ENST00000400301 TMEM168Q9H0V1 697 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 NKX2-4Q9H2Z4 354 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 TP63Q9H3D4 680 aaPredicted RBP17.35■□□□□ 0.37
USP48-204ENST00000400301 FGF22Q9HCT0 170 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 NAALAD2Q9Y3Q0 740 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 A0A075B6Q4 140 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 SERTM1A2A2V5 107 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 LRRN3E7EW58 273 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 DNASE1L1P49184 302 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 PDCD10Q9BUL8 212 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 LRRN3Q9H3W5 708 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 UCKL1Q9NWZ5 548 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 SPHK1Q9NYA1 384 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 GRHPRQ9UBQ7 328 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 PRODH2Q9UF12 536 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 APOBEC3BQ9UH17 382 aaKnown RBP17.35■□□□□ 0.37
USP48-204ENST00000400301 CACNA1CQ13936 2221 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 TET1Q8NFU7 2136 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 A0A087WUU8 490 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 PCMT1P22061 227 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 PUM1Q14671 1186 aaKnown RBP eCLIP17.35■□□□□ 0.374e-6■□□□□ 10.9
USP48-204ENST00000400301 PLK5Q496M5 336 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 TMEM240Q5SV17 173 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 MRPL2Q5T653 305 aaKnown RBP17.35■□□□□ 0.37
USP48-204ENST00000400301 SRA1Q9HD15 236 aaKnown RBP17.35■□□□□ 0.37
USP48-204ENST00000400301 SCML1Q9UN30 329 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 LGI1O95970 557 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 GSTT2BP0CG30 244 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 ZNF823P16415 610 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 PDX1P52945 283 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 LIM2P55344 173 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 OR1Q1Q15612 314 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 PRICKLE2Q7Z3G6 844 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 LACC1Q8IV20 430 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 OR8K3Q8NH51 312 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 FUZQ9BT04 418 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 OSGIN1Q9UJX0 560 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 ENTPD2Q9Y5L3 495 aa17.35■□□□□ 0.37
USP48-204ENST00000400301 TRAV27A0A087WT01 109 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 C1QCP02747 245 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 TEKQ02763 1124 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 NFATC4Q14934 902 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 OR5W2Q8NH69 310 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 METTL21AQ8WXB1 218 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 CNN2Q99439 309 aaKnown RBP17.34■□□□□ 0.37
USP48-204ENST00000400301 COMMD9Q9P000 198 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 SCN4AP35499 1836 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 GPR75O95800 540 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 RAB3BP20337 219 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 CFL1P23528 166 aaKnown RBP17.34■□□□□ 0.37
USP48-204ENST00000400301 HNRNPFP52597 415 aaKnown RBP17.34■□□□□ 0.37
USP48-204ENST00000400301 TNFRSF17Q02223 184 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 NTRK2Q16620 822 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 BTBD16Q32M84 506 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 OR6N2Q8NGY6 317 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 AKAP1Q92667 903 aaKnown RBP eCLIP17.34■□□□□ 0.37
USP48-204ENST00000400301 MED20Q9H944 212 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 BABAM2Q9NXR7 383 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 PCDHGA4Q9Y5G9 962 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 OTOFQ9HC10 1997 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 A0A1B0GVC2 190 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 TSPAN11A1L157 253 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 A6NIN4 97 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 H0YGG7 62 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 SOX30O94993 753 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 THEGLP0DJG4 465 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 GMFBP60983 142 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 ARF3P61204 181 aaPredicted RBP17.34■□□□□ 0.37
USP48-204ENST00000400301 TOMM20Q15388 145 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 HDDC2Q7Z4H3 204 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 EFHD2Q96C19 240 aaPredicted RBP17.34■□□□□ 0.37
USP48-204ENST00000400301 WASH6PQ9NQA3 447 aa17.34■□□□□ 0.37
USP48-204ENST00000400301 A0A0A6YYC8 382 aaPredicted RBP17.33■□□□□ 0.37
USP48-204ENST00000400301 I3L1I5 382 aaPredicted RBP17.33■□□□□ 0.37
USP48-204ENST00000400301 KLHL18O94889 574 aa17.33■□□□□ 0.37
USP48-204ENST00000400301 CASP3P42574 277 aa17.33■□□□□ 0.37
USP48-204ENST00000400301 POU4F2Q12837 409 aa17.33■□□□□ 0.37
USP48-204ENST00000400301 OCLNQ16625 522 aa17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms