RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PRKNO60260 465 aaPredicted RBP13.09□□□□□ -0.31
SKA1-202ENST00000398452 ITGA10O75578 1167 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 PPM1BO75688 479 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 OR2J2O76002 312 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 KRT36O76013 467 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 FABP3P05413 133 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 FESP07332 822 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 ITGAMP11215 1152 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 FASP25445 335 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 CASRP41180 1078 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 KCNJ5P48544 419 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 CHAF1BQ13112 559 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 RIPK1Q13546 671 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 RCN1Q15293 331 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 MAPK11Q15759 364 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 CRTC2Q53ET0 693 aaPredicted RBP13.09□□□□□ -0.31
SKA1-202ENST00000398452 ABHD17BQ5VST6 288 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 ENPP6Q6UWR7 440 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 OLIG3Q7RTU3 272 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 NUP54Q7Z3B4 507 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 ADGRG5Q8IZF4 528 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 SNIP1Q8TAD8 396 aaKnown RBP13.09□□□□□ -0.31
SKA1-202ENST00000398452 LHPPQ9H008 270 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 PTPRQQ9UMZ3 2332 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 DSPPQ9NZW4 1301 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 IGSF10Q6WRI0 2623 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 NPIPA5A0A0B4J1W7 369 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 NPIPA7E9PJI5 369 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 GTPBP1O00178 669 aaKnown RBP13.08□□□□□ -0.32
SKA1-202ENST00000398452 SYT5O00445 386 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 MGRN1O60291 552 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 TPST1O60507 370 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 UTS2O95399 124 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 IFNW1P05000 195 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 CELA2AP08217 269 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 NPIPA8P0DM63 369 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 CYP4B1P13584 511 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 UQCRBP14927 111 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 PDZK1Q5T2W1 519 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 DHRS4L2Q6PKH6 230 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 HMGN2P46Q86SG4 172 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 VRK2Q86Y07 508 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 ZDHHC21Q8IVQ6 265 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 CMIPQ8IY22 773 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 SIRT6Q8N6T7 355 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 BRIX1Q8TDN6 353 aaKnown RBP13.08□□□□□ -0.32
SKA1-202ENST00000398452 TTC9Q92623 222 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 DUS3LQ96G46 650 aaKnown RBP13.08□□□□□ -0.32
SKA1-202ENST00000398452 RASL10BQ96S79 203 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 CHID1Q9BWS9 393 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 QRSL1Q9H0R6 528 aaKnown RBP13.08□□□□□ -0.32
SKA1-202ENST00000398452 RASSF4Q9H2L5 321 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 ARMC1Q9NVT9 282 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 FBXO34Q9NWN3 711 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 HPF1Q9NWY4 346 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 SLC35A3Q9Y2D2 325 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 DTNAQ9Y4J8 743 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 AHCTF1Q8WYP5 2266 aa13.08□□□□□ -0.32
SKA1-202ENST00000398452 AP3D1O14617 1153 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 NKX2-8O15522 239 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 TSPAN2O60636 221 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 DEAF1O75398 565 aaPredicted RBP13.07□□□□□ -0.32
SKA1-202ENST00000398452 GCM2O75603 506 aaPredicted RBP13.07□□□□□ -0.32
SKA1-202ENST00000398452 UGT2B17O75795 530 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 IGKV1D-16P01601 117 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 NID1P14543 1247 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 ARHGDIAP52565 204 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 RGS8P57771 180 aaPredicted RBP13.07□□□□□ -0.32
SKA1-202ENST00000398452 MLF1P58340 268 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 KCNJ10P78508 379 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 CDC20Q12834 499 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 ZNF141Q15928 474 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 DUSP7Q16829 419 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 RNF220Q5VTB9 566 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 CCDC81Q6ZN84 652 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 ZNF550Q7Z398 422 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 VTCN1Q7Z7D3 282 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 RANBP3LQ86VV4 465 aaPredicted RBP13.07□□□□□ -0.32
SKA1-202ENST00000398452 CARM1Q86X55 608 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 OR5M3Q8NGP4 307 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 OR10Q1Q8NGQ4 319 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 VANGL1Q8TAA9 524 aaPredicted RBP13.07□□□□□ -0.32
SKA1-202ENST00000398452 SPACA9Q96E40 222 aaPredicted RBP13.07□□□□□ -0.32
SKA1-202ENST00000398452 LMF1Q96S06 567 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 ZNF347Q96SE7 839 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 BDH2Q9BUT1 245 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 SDHAF3Q9NRP4 125 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 KLRF1Q9NZS2 232 aa13.07□□□□□ -0.32
SKA1-202ENST00000398452 SERINC4A6NH21 518 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 NDUFB5O43674 189 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 ICOSLGO75144 302 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 TIPRLO75663 272 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 CYP7B1O75881 506 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 ATP6V1G2O95670 118 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 CST1P01037 141 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 CSTAP01040 98 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 LDLRP01130 860 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 PRB1P04280 392 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 CD247P20963 164 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 TBXA2RP21731 343 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms