RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 TMEM225Q6GV28 225 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 Q6ZSR9 355 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 CREB3L2Q70SY1 520 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 ERN2Q76MJ5 926 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 C12orf45Q8N5I9 185 aaPredicted RBP18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 TMEM163Q8TC26 289 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 NEIL2Q969S2 332 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 MEGF11A6BM72 1044 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 HMGN2P05204 90 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 ACP2P11117 423 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 ALDH3B1P43353 468 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 PTPRRQ15256 657 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 ZER1Q7Z7L7 766 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 SLC35F2Q8IXU6 374 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 PELI3Q8N2H9 469 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 SVBPQ8N300 66 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 OR5H2Q8NGV7 314 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 SLC7A13Q8TCU3 470 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 C4orf36Q96KX1 117 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 MRI1Q9BV20 369 aa18.42■□□□□ 0.54
CCDC88B-202ENST00000356786 KNG1P01042 644 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 CAPZA1P52907 286 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 ENTHD1Q8IYW4 607 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 NLGN4XQ8N0W4 816 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 LRIG1Q96JA1 1093 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 SMIM14Q96QK8 99 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 WDR83Q9BRX9 315 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 CERS4Q9HA82 394 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 RAD1O60671 282 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 ALX3O95076 343 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 SGSHP51688 502 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 BEX5Q5H9J7 111 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 APOOLQ6UXV4 268 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 TRIM46Q7Z4K8 759 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 RNF175Q8N4F7 328 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 CLDN22Q8N7P3 220 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 ANKLE1Q8NAG6 615 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 GPR148Q8TDV2 347 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 ATXN7L1Q9ULK2 861 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 I6L893 689 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 PEX14O75381 377 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 SYPP08247 313 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 IDH3GP51553 393 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 NKX3-2P78367 333 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 OC90Q02509 493 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 TUBB3Q13509 450 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 ZNF776Q68DI1 518 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 LYPD4Q6UWN0 246 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 LAS2Q8IYD9 372 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 UBE2FQ969M7 185 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 MMABQ96EY8 250 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 PTCHD1Q96NR3 888 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 TXNL4BQ9NX01 149 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 A3GALT2U3KPV4 340 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 SMLR1H3BR10 107 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 BPNT1O95861 308 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 GYPBP06028 91 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 DDCP20711 480 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 BDKRB2P30411 391 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 HBA1P69905 142 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 SLAIN1Q8ND83 568 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 ACOT11Q8WXI4 607 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 TMEM234Q8WY98 164 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 ELP4Q96EB1 424 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 USP36Q9P275 1121 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 NDRG2Q9UN36 371 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 CYP8B1Q9UNU6 501 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 V9GY05 133 aa18.41■□□□□ 0.54
CCDC88B-202ENST00000356786 CASC3O15234 703 aaKnown RBP18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 TGM6O95932 706 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 INHAP05111 366 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 HOXC12P31275 282 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 GALK2Q01415 458 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 ZNF674Q2M3X9 581 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 KCTD11Q693B1 232 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 OR2T11Q8NH01 316 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 ZNF417Q8TAU3 575 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 TMEM239Q8WW34 195 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 NECTIN4Q96NY8 510 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 FYTTD1Q96QD9 318 aaKnown RBP18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 CDC6Q99741 560 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 PINK1Q9BXM7 581 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 METTL7AQ9H8H3 244 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 ABRACLQ9P1F3 81 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 SLC43A1O75387 559 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 SCG5P05408 212 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 CCNOP22674 350 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 ARHGAP40Q5TG30 622 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 SLC18B1Q6NT16 456 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 SGIP1Q9BQI5 828 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 DMRT3Q9NQL9 472 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 TJP1Q07157 1748 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 MROH6A6NGR9 719 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 SCO2O43819 266 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 LCMT2O60294 686 aaKnown RBP18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 GASTP01350 101 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 TNFP01375 233 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 IFNA1P01562 189 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 CXADRP78310 365 aa18.4■□□□□ 0.54
CCDC88B-202ENST00000356786 NKX6-1P78426 367 aaPredicted RBP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms