RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 MPIG6BO95866 241 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 CCNJQ5T5M9 372 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 OR4K15Q8NH41 348 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 KLRG1Q96E93 195 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 RANGRFQ9HD47 186 aaPredicted RBP13.13□□□□□ -0.31
CSPG4-201ENST00000308508 MYEF2Q9P2K5 600 aaKnown RBP13.13□□□□□ -0.31
CSPG4-201ENST00000308508 CACNG4Q9UBN1 327 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 PCDHGA7Q9Y5G6 932 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 LOC105369274A0A096LPK9 316 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 MAGEB4O15481 346 aaPredicted RBP13.13□□□□□ -0.31
CSPG4-201ENST00000308508 TAS2R46P59540 309 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 NOGQ13253 232 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 OR4N4Q8N0Y3 316 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 TMEM19Q96HH6 336 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 MED30Q96HR3 178 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 CFHP08603 1231 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 RNF144AP50876 292 aaPredicted RBP13.13□□□□□ -0.31
CSPG4-201ENST00000308508 KCNQ1P51787 676 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 SELENOWP63302 87 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 RBMS3Q6XE24 437 aaKnown RBP13.13□□□□□ -0.31
CSPG4-201ENST00000308508 SPARTQ8N0X7 666 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 NDUFB2O95178 105 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 RNF151Q2KHN1 245 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 LIX1LQ8IVB5 337 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 UEVLDQ8IX04 471 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 Q8N9G6 341 aaPredicted RBP13.13□□□□□ -0.31
CSPG4-201ENST00000308508 IMP4Q96G21 291 aaKnown RBP13.13□□□□□ -0.31
CSPG4-201ENST00000308508 SAMD8Q96LT4 415 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 PEBP4Q96S96 227 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 NMNAT1Q9HAN9 279 aaPredicted RBP13.13□□□□□ -0.31
CSPG4-201ENST00000308508 CNOT2Q9NZN8 540 aaKnown RBP13.13□□□□□ -0.31
CSPG4-201ENST00000308508 YIPF1Q9Y548 306 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 RPS17P08708 135 aaKnown RBP13.13□□□□□ -0.31
CSPG4-201ENST00000308508 RAB40ALP0C0E4 278 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 CXCR4P61073 352 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 PRKCZQ05513 592 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 CST9LP1Q5W188 147 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 STEAP4Q687X5 459 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 TTLL10Q6ZVT0 673 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 GPR155Q7Z3F1 870 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.13□□□□□ -0.31
CSPG4-201ENST00000308508 RAB40AQ8WXH6 277 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 ADAMTS14Q8WXS8 1223 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 ZNF689Q96CS4 500 aaPredicted RBP13.13□□□□□ -0.31
CSPG4-201ENST00000308508 NPY6RQ99463 290 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 OR1A2Q9Y585 309 aa13.13□□□□□ -0.31
CSPG4-201ENST00000308508 DAP3P51398 398 aaKnown RBP13.12□□□□□ -0.31
CSPG4-201ENST00000308508 BRICD5Q6PL45 260 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 NXPE4Q6UWF7 544 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 ZNF860A6NHJ4 632 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 RPS21P63220 83 aaKnown RBP13.12□□□□□ -0.31
CSPG4-201ENST00000308508 GLO1Q04760 184 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 ZNF805Q5CZA5 627 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 KIAA0907Q7Z7F0 614 aaPredicted RBP13.12□□□□□ -0.31
CSPG4-201ENST00000308508 FN3KRPQ9HA64 309 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 ATXN7L1Q9ULK2 861 aaPredicted RBP13.12□□□□□ -0.31
CSPG4-201ENST00000308508 A0A1W2PQ09 198 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 SLC22A23A1A5C7 686 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 MITFO75030 526 aaPredicted RBP13.12□□□□□ -0.31
CSPG4-201ENST00000308508 IL1AP01583 271 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 ARAFP10398 606 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 RGMBQ6NW40 437 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 CYS1Q717R9 158 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 HIF1ANQ9NWT6 349 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 CBY1Q9Y3M2 126 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 KCNK2O95069 426 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 ADARB1P78563 741 aaKnown RBP13.12□□□□□ -0.31
CSPG4-201ENST00000308508 RBMS2Q15434 407 aaKnown RBP13.12□□□□□ -0.31
CSPG4-201ENST00000308508 KIAA0319Q5VV43 1072 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 OR6F1Q8NGZ6 308 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 NETO1Q8TDF5 533 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 TMIGD2Q96BF3 282 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 SMIM3Q9BZL3 60 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 CPNE7Q9UBL6 633 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 V9GY05 133 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 A6NIZ1 184 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 UBE2NP61088 152 aaKnown RBP13.12□□□□□ -0.31
CSPG4-201ENST00000308508 RAP1BP61224 184 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 RAP1AP62834 184 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 DEFB126Q9BYW3 111 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 PLIN4Q96Q06 1357 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 POM121CA8CG34 1229 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 NME4O00746 187 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 TSPAN6O43657 245 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 ACPPP15309 386 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 TSFMP43897 325 aaKnown RBP13.12□□□□□ -0.31
CSPG4-201ENST00000308508 INCA1Q0VD86 236 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 APOOLQ6UXV4 268 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 TFAP2CQ92754 450 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 TMEM175Q9BSA9 504 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 TAS2R16Q9NYV7 291 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 CEPT1Q9Y6K0 416 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 GRXCR2A6NFK2 248 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 GDI1P31150 447 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 ZNF33BQ06732 778 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 PDLIM3Q53GG5 364 aaPredicted RBP13.12□□□□□ -0.31
CSPG4-201ENST00000308508 YIF1BQ5BJH7 314 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 CDCA2Q69YH5 1023 aaPredicted RBP13.12□□□□□ -0.31
CSPG4-201ENST00000308508 OR9Q2Q8NGE9 314 aa13.12□□□□□ -0.31
CSPG4-201ENST00000308508 OR1E3Q8WZA6 343 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms