RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 PIGBOS1A0A0B4J2F0 54 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 KRBOX1C9JBD0 128 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 KCNJ13O60928 360 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 DCNP07585 359 aaKnown RBP12.11□□□□□ -0.47
COL3A1-201ENST00000304636 PIM1P11309 404 aaPredicted RBP12.11□□□□□ -0.47
COL3A1-201ENST00000304636 CDRT4Q8N9R6 151 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 OR51L1Q8NGJ5 315 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 UBTD2Q8WUN7 234 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 HMGB4Q8WW32 186 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 KLHL15Q96M94 604 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 ZNF587Q96SQ5 575 aaPredicted RBP12.11□□□□□ -0.47
COL3A1-201ENST00000304636 ZNF334Q9HCZ1 680 aaPredicted RBP12.11□□□□□ -0.47
COL3A1-201ENST00000304636 PARPBPQ9NWS1 579 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 NAALAD2Q9Y3Q0 740 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 OR1A2Q9Y585 309 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 NUPL2O15504 423 aaKnown RBP12.11□□□□□ -0.47
COL3A1-201ENST00000304636 HMGN2P05204 90 aaKnown RBP12.11□□□□□ -0.47
COL3A1-201ENST00000304636 NUDT7P0C024 238 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 CERS1P27544 350 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 TRA2BP62995 288 aaKnown RBP12.11□□□□□ -0.47
COL3A1-201ENST00000304636 HBA1P69905 142 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 FGL2Q14314 439 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 ARL6IP1Q15041 203 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 LRRC26Q2I0M4 334 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 OR2G6Q5TZ20 316 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 TMEM225Q6GV28 225 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 ZNF529Q6P280 563 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 TRIM46Q7Z4K8 759 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 SFXN5Q8TD22 340 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 OR5B12Q96R08 314 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 UHRF1Q96T88 793 aaPredicted RBP12.11□□□□□ -0.47
COL3A1-201ENST00000304636 PSD2Q9BQI7 771 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 HIF3AQ9Y2N7 669 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 SLC6A5Q9Y345 797 aa12.11□□□□□ -0.47
COL3A1-201ENST00000304636 ZNF736B4DX44 427 aaPredicted RBP12.1□□□□□ -0.47
COL3A1-201ENST00000304636 SNAPINO95295 136 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 ARSBP15848 533 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 AOAHP28039 575 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 LIPAP38571 399 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 MC3RP41968 323 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 SGSHP51688 502 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 SF3B4Q15427 424 aaKnown RBP eCLIP12.1□□□□□ -0.47
COL3A1-201ENST00000304636 SLC5A12Q1EHB4 618 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 KDM4DQ6B0I6 523 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 TBPL2Q6SJ96 375 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 MAMDC2Q7Z304 686 aaPredicted RBP12.1□□□□□ -0.47
COL3A1-201ENST00000304636 CSNK1A1LQ8N752 337 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 NAXEQ8NCW5 288 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 PTCHD1Q96NR3 888 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 HOXD1Q9GZZ0 328 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 OCEL1Q9H607 264 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 WASF3Q9UPY6 502 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 ZNF850A8MQ14 1090 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 FAM155AB1AL88 458 aaPredicted RBP12.1□□□□□ -0.47
COL3A1-201ENST00000304636 CDC123O75794 336 aaPredicted RBP12.1□□□□□ -0.47
COL3A1-201ENST00000304636 HOXB2P14652 356 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 BTN1A1Q13410 526 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 FAM122CQ6P4D5 195 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 C11orf54Q9H0W9 315 aaPredicted RBP12.1□□□□□ -0.47
COL3A1-201ENST00000304636 MED17Q9NVC6 651 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 LAMA4Q16363 1823 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 FZD7O75084 574 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 PEX14O75381 377 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 KCNK5O95279 499 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 RAB40ALP0C0E4 278 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 OR8U9P0C7N5 309 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 NNATQ16517 81 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 UBE2NLQ5JXB2 153 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 SLC6A19Q695T7 634 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 HBMQ6B0K9 141 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 GKN2Q86XP6 184 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 CHST14Q8NCH0 376 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 RAB40AQ8WXH6 277 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 HOXB13Q92826 284 aaPredicted RBP12.1□□□□□ -0.47
COL3A1-201ENST00000304636 OR52D1Q9H346 318 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 MAN2C1Q9NTJ4 1040 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 DIMT1Q9UNQ2 313 aaKnown RBP12.1□□□□□ -0.47
COL3A1-201ENST00000304636 DNAJC25-GNG10A0A024R161 153 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 TRBV4-1A0A0J9YWV2 114 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 FABP7O15540 132 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 FRS3O43559 492 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 CSNK1DP48730 415 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 ISL1P61371 349 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 FIP1L1Q6UN15 594 aaKnown RBP12.1□□□□□ -0.47
COL3A1-201ENST00000304636 LYPD4Q6UWN0 246 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 TMPRSS9Q7Z410 1059 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 TTC9BQ8N6N2 239 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 OR4F15Q8NGB8 312 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 OR9A2Q8NGT5 310 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 TCEAL3Q969E4 200 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 TCEAL7Q9BRU2 100 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 SLC25A18Q9H1K4 315 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 METTL17Q9H7H0 456 aaPredicted RBP12.1□□□□□ -0.47
COL3A1-201ENST00000304636 FBXO8Q9NRD0 319 aa12.1□□□□□ -0.47
COL3A1-201ENST00000304636 A6NIN4 97 aa12.09□□□□□ -0.47
COL3A1-201ENST00000304636 SRPX2O60687 465 aaPredicted RBP12.09□□□□□ -0.47
COL3A1-201ENST00000304636 RPS25P62851 125 aaKnown RBP12.09□□□□□ -0.47
COL3A1-201ENST00000304636 PLCXD2Q0VAA5 305 aa12.09□□□□□ -0.47
COL3A1-201ENST00000304636 ILKQ13418 452 aa12.09□□□□□ -0.47
COL3A1-201ENST00000304636 MEF2DQ14814 521 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms