RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 CFAP44Q96MT7 982 aa13.4□□□□□ -0.26
SCN1A-222ENST00000642141 UTP14AQ9BVJ6 771 aaKnown RBP13.4□□□□□ -0.26
SCN1A-222ENST00000642141 DDX21Q9NR30 783 aaKnown RBP eCLIP13.4□□□□□ -0.26
SCN1A-222ENST00000642141 TNRC6CQ9HCJ0 1690 aaKnown RBP13.4□□□□□ -0.26
SCN1A-222ENST00000642141 LTBP3Q9NS15 1303 aa13.39□□□□□ -0.27
SCN1A-222ENST00000642141 ZC3H4Q9UPT8 1303 aaKnown RBP13.39□□□□□ -0.27
SCN1A-222ENST00000642141 APLP1P51693 650 aa13.39□□□□□ -0.27
SCN1A-222ENST00000642141 CRY2Q49AN0 593 aa13.39□□□□□ -0.27
SCN1A-222ENST00000642141 ATP5J2-PTCD1G3V325 749 aa13.38□□□□□ -0.27
SCN1A-222ENST00000642141 FKBP4Q02790 459 aaKnown RBP eCLIP13.38□□□□□ -0.27
SCN1A-222ENST00000642141 TCIRG1Q13488 830 aa13.38□□□□□ -0.27
SCN1A-222ENST00000642141 PARP10Q53GL7 1025 aa13.38□□□□□ -0.27
SCN1A-222ENST00000642141 NLRP10Q86W26 655 aa13.38□□□□□ -0.27
SCN1A-222ENST00000642141 RTKN2Q8IZC4 609 aa13.38□□□□□ -0.27
SCN1A-222ENST00000642141 RBM17Q96I25 401 aaKnown RBP13.38□□□□□ -0.27
SCN1A-222ENST00000642141 NLRP3Q96P20 1036 aa13.38□□□□□ -0.27
SCN1A-222ENST00000642141 TRMT112Q9UI30 125 aaKnown RBP13.38□□□□□ -0.27
SCN1A-222ENST00000642141 TIAM2Q8IVF5 1701 aa13.38□□□□□ -0.27
SCN1A-222ENST00000642141 FER1L6Q2WGJ9 1857 aa13.38□□□□□ -0.27
SCN1A-222ENST00000642141 ZNF316A6NFI3 1004 aaPredicted RBP13.37□□□□□ -0.27
SCN1A-222ENST00000642141 FSTL1Q12841 308 aa13.37□□□□□ -0.27
SCN1A-222ENST00000642141 RTL5Q5HYW3 569 aaPredicted RBP13.37□□□□□ -0.27
SCN1A-222ENST00000642141 SMC1BQ8NDV3 1235 aa13.37□□□□□ -0.27
SCN1A-222ENST00000642141 PPEF1O14829 653 aaPredicted RBP13.36□□□□□ -0.27
SCN1A-222ENST00000642141 ZNF853P0CG23 659 aa13.36□□□□□ -0.27
SCN1A-222ENST00000642141 POTEIP0CG38 1075 aa13.36□□□□□ -0.27
SCN1A-222ENST00000642141 POTEJP0CG39 1038 aa13.36□□□□□ -0.27
SCN1A-222ENST00000642141 HOXA10P31260 410 aaPredicted RBP13.36□□□□□ -0.27
SCN1A-222ENST00000642141 ANKRD13DQ6ZTN6 518 aa13.36□□□□□ -0.27
SCN1A-222ENST00000642141 DNAJC5GQ8N7S2 189 aa13.36□□□□□ -0.27
SCN1A-222ENST00000642141 C8orf58Q8NAV2 365 aa13.36□□□□□ -0.27
SCN1A-222ENST00000642141 DBF4Q9UBU7 674 aaPredicted RBP13.36□□□□□ -0.27
SCN1A-222ENST00000642141 SALL2Q9Y467 1007 aaPredicted RBP13.36□□□□□ -0.27
SCN1A-222ENST00000642141 ZNF541Q9H0D2 1346 aa13.36□□□□□ -0.27
SCN1A-222ENST00000642141 IARSP41252 1262 aaKnown RBP13.35□□□□□ -0.27
SCN1A-222ENST00000642141 GNAI1P63096 354 aa13.35□□□□□ -0.27
SCN1A-222ENST00000642141 HSP90AB3PQ58FF7 597 aa13.35□□□□□ -0.27
SCN1A-222ENST00000642141 SLC10A5Q5PT55 438 aa13.35□□□□□ -0.27
SCN1A-222ENST00000642141 PLBD2Q8NHP8 589 aa13.35□□□□□ -0.27
SCN1A-222ENST00000642141 TSR2Q969E8 191 aaKnown RBP13.35□□□□□ -0.27
SCN1A-222ENST00000642141 CRAMP1Q96RY5 1269 aa13.35□□□□□ -0.27
SCN1A-222ENST00000642141 PHAXQ9H814 394 aaKnown RBP13.35□□□□□ -0.27
SCN1A-222ENST00000642141 MRS2Q9HD23 443 aa13.35□□□□□ -0.27
SCN1A-222ENST00000642141 IFT57Q9NWB7 429 aa13.35□□□□□ -0.27
SCN1A-222ENST00000642141 IBTKQ9P2D0 1353 aaPredicted RBP13.34□□□□□ -0.27
SCN1A-222ENST00000642141 CALD1Q05682 793 aaKnown RBP13.34□□□□□ -0.27
SCN1A-222ENST00000642141 FAM89AQ96GI7 184 aa13.34□□□□□ -0.27
SCN1A-222ENST00000642141 HYPKQ9NX55 129 aa13.34□□□□□ -0.27
SCN1A-222ENST00000642141 ARFGEF2Q9Y6D5 1785 aa13.33□□□□□ -0.28
SCN1A-222ENST00000642141 ANP32CO43423 234 aa13.33□□□□□ -0.28
SCN1A-222ENST00000642141 HOXB7P09629 217 aa13.33□□□□□ -0.28
SCN1A-222ENST00000642141 EAPPQ56P03 285 aaPredicted RBP13.33□□□□□ -0.28
SCN1A-222ENST00000642141 RIC3Q7Z5B4 369 aa13.33□□□□□ -0.28
SCN1A-222ENST00000642141 TSPYL6Q8N831 410 aa13.33□□□□□ -0.28
SCN1A-222ENST00000642141 JARID2Q92833 1246 aaPredicted RBP13.33□□□□□ -0.28
SCN1A-222ENST00000642141 GJA3Q9Y6H8 435 aa13.33□□□□□ -0.28
SCN1A-222ENST00000642141 ABCC4O15439 1325 aa13.33□□□□□ -0.28
SCN1A-222ENST00000642141 SH3TC1Q8TE82 1336 aa13.33□□□□□ -0.28
SCN1A-222ENST00000642141 LARGE2Q8N3Y3 721 aa13.32□□□□□ -0.28
SCN1A-222ENST00000642141 JDP2Q8WYK2 163 aa13.32□□□□□ -0.28
SCN1A-222ENST00000642141 PSMD1Q99460 953 aa13.32□□□□□ -0.28
SCN1A-222ENST00000642141 TMX4Q9H1E5 349 aaPredicted RBP13.32□□□□□ -0.28
SCN1A-222ENST00000642141 FZD9O00144 591 aa13.31□□□□□ -0.28
SCN1A-222ENST00000642141 AOC3Q16853 763 aa13.31□□□□□ -0.28
SCN1A-222ENST00000642141 CC2D2BQ6DHV5 1058 aa13.31□□□□□ -0.28
SCN1A-222ENST00000642141 DDX46Q7L014 1031 aaKnown RBP13.31□□□□□ -0.28
SCN1A-222ENST00000642141 ISCA1Q9BUE6 129 aa13.31□□□□□ -0.28
SCN1A-222ENST00000642141 CLEC11AQ9Y240 323 aa13.31□□□□□ -0.28
SCN1A-222ENST00000642141 ATP6V0A2Q9Y487 856 aa13.31□□□□□ -0.28
SCN1A-222ENST00000642141 RNF123Q5XPI4 1314 aa13.31□□□□□ -0.28
SCN1A-222ENST00000642141 DICER1Q9UPY3 1922 aaKnown RBP13.31□□□□□ -0.28
SCN1A-222ENST00000642141 RIC1Q4ADV7 1423 aa13.3□□□□□ -0.28
SCN1A-222ENST00000642141 GOLGA2Q08379 1002 aa13.3□□□□□ -0.28
SCN1A-222ENST00000642141 CHADLQ6NUI6 762 aa13.3□□□□□ -0.28
SCN1A-222ENST00000642141 WWC1Q8IX03 1113 aa13.3□□□□□ -0.28
SCN1A-222ENST00000642141 MYD88Q99836 296 aa13.3□□□□□ -0.28
SCN1A-222ENST00000642141 TAF1DQ9H5J8 278 aaPredicted RBP13.3□□□□□ -0.28
SCN1A-222ENST00000642141 COL4A5P29400 1685 aa13.3□□□□□ -0.28
SCN1A-222ENST00000642141 WDR90Q96KV7 1748 aa13.3□□□□□ -0.28
SCN1A-222ENST00000642141 IQCA1LA6NCM1 817 aa13.29□□□□□ -0.28
SCN1A-222ENST00000642141 PPIP5K2O43314 1243 aa13.29□□□□□ -0.28
SCN1A-222ENST00000642141 BBOX1O75936 387 aa13.29□□□□□ -0.28
SCN1A-222ENST00000642141 DPP8Q6V1X1 898 aaPredicted RBP13.29□□□□□ -0.28
SCN1A-222ENST00000642141 HACL1Q9UJ83 578 aa13.29□□□□□ -0.28
SCN1A-222ENST00000642141 SNED1Q8TER0 1413 aa13.29□□□□□ -0.28
SCN1A-222ENST00000642141 IRS4O14654 1257 aaPredicted RBP13.28□□□□□ -0.28
SCN1A-222ENST00000642141 EPHX2P34913 555 aa13.28□□□□□ -0.28
SCN1A-222ENST00000642141 EIF6P56537 245 aaKnown RBP13.28□□□□□ -0.28
SCN1A-222ENST00000642141 CCDC30Q5VVM6 783 aa13.28□□□□□ -0.28
SCN1A-222ENST00000642141 SP8Q8IXZ3 490 aa13.28□□□□□ -0.28
SCN1A-222ENST00000642141 NIM1KQ8IY84 436 aa13.28□□□□□ -0.28
SCN1A-222ENST00000642141 KLRG1Q96E93 195 aa13.28□□□□□ -0.28
SCN1A-222ENST00000642141 L3MBTL3Q96JM7 780 aaPredicted RBP13.28□□□□□ -0.28
SCN1A-222ENST00000642141 CCDC85AQ96PX6 553 aaPredicted RBP13.28□□□□□ -0.28
SCN1A-222ENST00000642141 GRAPQ13588 217 aa13.27□□□□□ -0.29
SCN1A-222ENST00000642141 FAM9BQ8IZU0 186 aa13.27□□□□□ -0.29
SCN1A-222ENST00000642141 GPC2Q8N158 579 aa13.27□□□□□ -0.29
SCN1A-222ENST00000642141 MPNDQ8N594 471 aa13.27□□□□□ -0.29
SCN1A-222ENST00000642141 GRAPLQ8TC17 118 aaPredicted RBP13.27□□□□□ -0.29
SCN1A-222ENST00000642141 CELF1Q92879 486 aaKnown RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms