RNA–Protein interactions for RNA: ENST00000642072.1

LINC00339-212, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-212ENST00000642072 DDX21Q9NR30 783 aaKnown RBP eCLIP11.47□□□□□ -0.57
LINC00339-212ENST00000642072 CLEC11AQ9Y240 323 aa11.47□□□□□ -0.57
LINC00339-212ENST00000642072 MAP3K15Q6ZN16 1313 aa11.46□□□□□ -0.57
LINC00339-212ENST00000642072 WDR33Q9C0J8 1336 aaKnown RBP11.46□□□□□ -0.57
LINC00339-212ENST00000642072 FMR1Q06787 632 aaKnown RBP eCLIP11.46□□□□□ -0.57
LINC00339-212ENST00000642072 TAF7Q15545 349 aaPredicted RBP11.46□□□□□ -0.57
LINC00339-212ENST00000642072 CC2D2BQ6DHV5 1058 aa11.46□□□□□ -0.57
LINC00339-212ENST00000642072 MIS18AQ9NYP9 233 aa11.46□□□□□ -0.57
LINC00339-212ENST00000642072 NUDCQ9Y266 331 aa11.46□□□□□ -0.57
LINC00339-212ENST00000642072 EPS15P42566 896 aa11.45□□□□□ -0.58
LINC00339-212ENST00000642072 TTLL7Q6ZT98 887 aa11.45□□□□□ -0.58
LINC00339-212ENST00000642072 C3orf67Q6ZVT6 689 aa11.45□□□□□ -0.58
LINC00339-212ENST00000642072 JDP2Q8WYK2 163 aa11.45□□□□□ -0.58
LINC00339-212ENST00000642072 NYXQ9GZU5 481 aa11.45□□□□□ -0.58
LINC00339-212ENST00000642072 NUP98P52948 1817 aa11.44□□□□□ -0.58
LINC00339-212ENST00000642072 NTSR2O95665 410 aa11.44□□□□□ -0.58
LINC00339-212ENST00000642072 EIF4A1P60842 406 aaKnown RBP11.44□□□□□ -0.58
LINC00339-212ENST00000642072 MAP2K1Q02750 393 aaPredicted RBP11.44□□□□□ -0.58
LINC00339-212ENST00000642072 SUSD4Q5VX71 490 aa11.44□□□□□ -0.58
LINC00339-212ENST00000642072 CST9Q5W186 159 aa11.44□□□□□ -0.58
LINC00339-212ENST00000642072 LRP10Q7Z4F1 713 aa11.44□□□□□ -0.58
LINC00339-212ENST00000642072 ZNF34Q8IZ26 560 aa11.44□□□□□ -0.58
LINC00339-212ENST00000642072 ABHD8Q96I13 439 aa11.44□□□□□ -0.58
LINC00339-212ENST00000642072 CRAMP1Q96RY5 1269 aa11.44□□□□□ -0.58
LINC00339-212ENST00000642072 ABT1Q9ULW3 272 aaKnown RBP11.44□□□□□ -0.58
LINC00339-212ENST00000642072 TNRC18O15417 2968 aaPredicted RBP11.43□□□□□ -0.58
LINC00339-212ENST00000642072 GTF2E1P29083 439 aaPredicted RBP11.43□□□□□ -0.58
LINC00339-212ENST00000642072 EIF6P56537 245 aaKnown RBP11.43□□□□□ -0.58
LINC00339-212ENST00000642072 GRIPAP1Q4V328 841 aa11.43□□□□□ -0.58
LINC00339-212ENST00000642072 GJA3Q9Y6H8 435 aa11.43□□□□□ -0.58
LINC00339-212ENST00000642072 TRAF5O00463 557 aa11.42□□□□□ -0.58
LINC00339-212ENST00000642072 GPTP24298 496 aa11.42□□□□□ -0.58
LINC00339-212ENST00000642072 USP50Q70EL3 339 aaPredicted RBP11.42□□□□□ -0.58
LINC00339-212ENST00000642072 LARGE2Q8N3Y3 721 aa11.42□□□□□ -0.58
LINC00339-212ENST00000642072 NGEFQ8N5V2 710 aa11.42□□□□□ -0.58
LINC00339-212ENST00000642072 RPGRQ92834 1020 aaKnown RBP11.42□□□□□ -0.58
LINC00339-212ENST00000642072 CAPNS2Q96L46 248 aa11.42□□□□□ -0.58
LINC00339-212ENST00000642072 PLEKHF1Q96S99 279 aa11.42□□□□□ -0.58
LINC00339-212ENST00000642072 ZBTB3Q9H5J0 574 aa11.42□□□□□ -0.58
LINC00339-212ENST00000642072 DLG5Q8TDM6 1919 aa11.41□□□□□ -0.58
LINC00339-212ENST00000642072 PPEF1O14829 653 aaPredicted RBP11.41□□□□□ -0.58
LINC00339-212ENST00000642072 LMOD1P29536 600 aaPredicted RBP11.41□□□□□ -0.58
LINC00339-212ENST00000642072 CYP4F22Q6NT55 531 aa11.41□□□□□ -0.58
LINC00339-212ENST00000642072 GIGYF2Q6Y7W6 1299 aaKnown RBP11.41□□□□□ -0.58
LINC00339-212ENST00000642072 KIF6Q6ZMV9 814 aa11.41□□□□□ -0.58
LINC00339-212ENST00000642072 PNISRQ8TF01 805 aaKnown RBP11.41□□□□□ -0.58
LINC00339-212ENST00000642072 RTFDC1Q9BY42 306 aaPredicted RBP11.41□□□□□ -0.58
LINC00339-212ENST00000642072 RRP7AQ9Y3A4 280 aaKnown RBP11.41□□□□□ -0.58
LINC00339-212ENST00000642072 TLL2Q9Y6L7 1015 aa11.41□□□□□ -0.58
LINC00339-212ENST00000642072 ERBB4Q15303 1308 aa11.4□□□□□ -0.58
LINC00339-212ENST00000642072 SLC34A2O95436 690 aa11.4□□□□□ -0.58
LINC00339-212ENST00000642072 MYL6BP14649 208 aa11.4□□□□□ -0.58
LINC00339-212ENST00000642072 PDIA6Q15084 440 aa11.4□□□□□ -0.58
LINC00339-212ENST00000642072 SLC10A5Q5PT55 438 aa11.4□□□□□ -0.58
LINC00339-212ENST00000642072 RBM17Q96I25 401 aaKnown RBP11.4□□□□□ -0.58
LINC00339-212ENST00000642072 GPR101Q96P66 508 aaPredicted RBP11.4□□□□□ -0.58
LINC00339-212ENST00000642072 THUMPD2Q9BTF0 503 aaKnown RBP11.4□□□□□ -0.58
LINC00339-212ENST00000642072 GPRC5DQ9NZD1 345 aa11.4□□□□□ -0.58
LINC00339-212ENST00000642072 PGAP2Q9UHJ9 254 aa11.4□□□□□ -0.58
LINC00339-212ENST00000642072 ATP6V0A2Q9Y487 856 aa11.4□□□□□ -0.58
LINC00339-212ENST00000642072 ABCC4O15439 1325 aa11.39□□□□□ -0.59
LINC00339-212ENST00000642072 PPIP5K2O43314 1243 aa11.39□□□□□ -0.59
LINC00339-212ENST00000642072 ECE1P42892 770 aa11.39□□□□□ -0.59
LINC00339-212ENST00000642072 CXCL9Q07325 125 aa11.39□□□□□ -0.59
LINC00339-212ENST00000642072 AOC3Q16853 763 aa11.39□□□□□ -0.59
LINC00339-212ENST00000642072 FAM161AQ3B820 660 aa11.39□□□□□ -0.59
LINC00339-212ENST00000642072 SAPCD2Q86UD0 394 aa11.39□□□□□ -0.59
LINC00339-212ENST00000642072 NIM1KQ8IY84 436 aa11.39□□□□□ -0.59
LINC00339-212ENST00000642072 TRPM7Q96QT4 1865 aa11.39□□□□□ -0.59
LINC00339-212ENST00000642072 VPS33BQ9H267 617 aa11.39□□□□□ -0.59
LINC00339-212ENST00000642072 ADARB2Q9NS39 739 aaKnown RBP11.39□□□□□ -0.59
LINC00339-212ENST00000642072 DUOX1Q9NRD9 1551 aa11.38□□□□□ -0.59
LINC00339-212ENST00000642072 TCERG1O14776 1098 aaKnown RBP11.38□□□□□ -0.59
LINC00339-212ENST00000642072 AOC2O75106 756 aa11.38□□□□□ -0.59
LINC00339-212ENST00000642072 MAP2K2P36507 400 aa11.38□□□□□ -0.59
LINC00339-212ENST00000642072 RGS19P49795 217 aa11.38□□□□□ -0.59
LINC00339-212ENST00000642072 NFE2L2Q16236 605 aa11.38□□□□□ -0.59
LINC00339-212ENST00000642072 PARP10Q53GL7 1025 aa11.38□□□□□ -0.59
LINC00339-212ENST00000642072 ZNRF3Q9ULT6 936 aa11.38□□□□□ -0.59
LINC00339-212ENST00000642072 CDHR2Q9BYE9 1310 aa11.37□□□□□ -0.59
LINC00339-212ENST00000642072 GMPSP49915 693 aaPredicted RBP11.37□□□□□ -0.59
LINC00339-212ENST00000642072 HIRAP54198 1017 aaPredicted RBP11.37□□□□□ -0.59
LINC00339-212ENST00000642072 KIAA2012Q0VF49 1180 aa11.37□□□□□ -0.59
LINC00339-212ENST00000642072 PROSER3Q2NL68 480 aa11.37□□□□□ -0.59
LINC00339-212ENST00000642072 PPP1R42Q7Z4L9 355 aa11.37□□□□□ -0.59
LINC00339-212ENST00000642072 HHIPL1Q96JK4 782 aa11.37□□□□□ -0.59
LINC00339-212ENST00000642072 NLRP3Q96P20 1036 aa11.37□□□□□ -0.59
LINC00339-212ENST00000642072 PAXIP1Q6ZW49 1069 aaPredicted RBP11.36□□□□□ -0.59
LINC00339-212ENST00000642072 UTP14AQ9BVJ6 771 aaKnown RBP11.36□□□□□ -0.59
LINC00339-212ENST00000642072 GLIS2Q9BZE0 524 aaPredicted RBP11.36□□□□□ -0.59
LINC00339-212ENST00000642072 TSKSQ9UJT2 592 aa11.36□□□□□ -0.59
LINC00339-212ENST00000642072 LAMB2P55268 1798 aa11.36□□□□□ -0.59
LINC00339-212ENST00000642072 LRRC37AA6NMS7 1700 aa11.35□□□□□ -0.59
LINC00339-212ENST00000642072 BBOX1O75936 387 aa11.35□□□□□ -0.59
LINC00339-212ENST00000642072 CELF2O95319 508 aaKnown RBP11.35□□□□□ -0.59
LINC00339-212ENST00000642072 BRPF1P55201 1214 aaPredicted RBP11.35□□□□□ -0.59
LINC00339-212ENST00000642072 GRM1Q13255 1194 aa11.35□□□□□ -0.59
LINC00339-212ENST00000642072 SP8Q8IXZ3 490 aa11.35□□□□□ -0.59
LINC00339-212ENST00000642072 TRPM4Q8TD43 1214 aa11.35□□□□□ -0.59
LINC00339-212ENST00000642072 ZC3H15Q8WU90 426 aaKnown RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms