RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 PRPF40BQ6NWY9 871 aaKnown RBP12.11□□□□□ -0.47
PHGDH-228ENST00000641847 VSIG10Q8N0Z9 540 aa12.11□□□□□ -0.47
PHGDH-228ENST00000641847 CNBD1Q8NA66 436 aa12.11□□□□□ -0.47
PHGDH-228ENST00000641847 MASTLQ96GX5 879 aa12.11□□□□□ -0.47
PHGDH-228ENST00000641847 BCL2L12Q9HB09 334 aa12.11□□□□□ -0.47
PHGDH-228ENST00000641847 ZBTB1Q9Y2K1 713 aa12.11□□□□□ -0.47
PHGDH-228ENST00000641847 CARMIL3Q8ND23 1372 aa12.1□□□□□ -0.47
PHGDH-228ENST00000641847 SETDB2Q96T68 719 aa12.1□□□□□ -0.47
PHGDH-228ENST00000641847 DDX21Q9NR30 783 aaKnown RBP eCLIP12.1□□□□□ -0.47
PHGDH-228ENST00000641847 CCDC88AQ3V6T2 1871 aa12.1□□□□□ -0.47
PHGDH-228ENST00000641847 DLEC1Q9Y238 1755 aa12.1□□□□□ -0.47
PHGDH-228ENST00000641847 KCNQ3O43525 872 aa12.09□□□□□ -0.47
PHGDH-228ENST00000641847 LMOD1P29536 600 aaPredicted RBP12.09□□□□□ -0.47
PHGDH-228ENST00000641847 MAP2K2P36507 400 aa12.09□□□□□ -0.47
PHGDH-228ENST00000641847 SLC39A6Q13433 755 aa12.09□□□□□ -0.47
PHGDH-228ENST00000641847 PRR5LQ6MZQ0 368 aa12.09□□□□□ -0.47
PHGDH-228ENST00000641847 RTKN2Q8IZC4 609 aa12.09□□□□□ -0.47
PHGDH-228ENST00000641847 TTC5Q8N0Z6 440 aa12.09□□□□□ -0.47
PHGDH-228ENST00000641847 LAMB4A4D0S4 1761 aa12.09□□□□□ -0.47
PHGDH-228ENST00000641847 PDE4DIPQ5VU43 2346 aa12.08□□□□□ -0.48
PHGDH-228ENST00000641847 SRGNP10124 158 aa12.08□□□□□ -0.48
PHGDH-228ENST00000641847 FKBP4Q02790 459 aaKnown RBP eCLIP12.08□□□□□ -0.48
PHGDH-228ENST00000641847 KRT24Q2M2I5 525 aa12.08□□□□□ -0.48
PHGDH-228ENST00000641847 TBC1D9BQ66K14 1250 aa12.08□□□□□ -0.48
PHGDH-228ENST00000641847 ZNF790Q6PG37 636 aa12.08□□□□□ -0.48
PHGDH-228ENST00000641847 GPC2Q8N158 579 aa12.08□□□□□ -0.48
PHGDH-228ENST00000641847 MCOLN1Q9GZU1 580 aa12.08□□□□□ -0.48
PHGDH-228ENST00000641847 SCN4AP35499 1836 aa12.08□□□□□ -0.48
PHGDH-228ENST00000641847 NRXN2Q9P2S2 1712 aa12.08□□□□□ -0.48
PHGDH-228ENST00000641847 DICER1Q9UPY3 1922 aaKnown RBP12.07□□□□□ -0.48
PHGDH-228ENST00000641847 AFDNP55196 1824 aaKnown RBP12.07□□□□□ -0.48
PHGDH-228ENST00000641847 EIF5P55010 431 aaKnown RBP12.07□□□□□ -0.48
PHGDH-228ENST00000641847 EIF4A1P60842 406 aaKnown RBP12.07□□□□□ -0.48
PHGDH-228ENST00000641847 CYP4F22Q6NT55 531 aa12.07□□□□□ -0.48
PHGDH-228ENST00000641847 CCDC24Q8N4L8 307 aa12.07□□□□□ -0.48
PHGDH-228ENST00000641847 C8orf58Q8NAV2 365 aa12.07□□□□□ -0.48
PHGDH-228ENST00000641847 JDP2Q8WYK2 163 aa12.07□□□□□ -0.48
PHGDH-228ENST00000641847 TEX13AQ9BXU3 409 aaPredicted RBP12.07□□□□□ -0.48
PHGDH-228ENST00000641847 ZNF330Q9Y3S2 320 aaPredicted RBP12.07□□□□□ -0.48
PHGDH-228ENST00000641847 RNF123Q5XPI4 1314 aa12.07□□□□□ -0.48
PHGDH-228ENST00000641847 TJP1Q07157 1748 aa12.06□□□□□ -0.48
PHGDH-228ENST00000641847 ELL2O00472 640 aaPredicted RBP12.06□□□□□ -0.48
PHGDH-228ENST00000641847 CT47B1P0C2W7 299 aaPredicted RBP12.06□□□□□ -0.48
PHGDH-228ENST00000641847 DGKZQ13574 1117 aa12.06□□□□□ -0.48
PHGDH-228ENST00000641847 TWISTNBQ3B726 338 aaPredicted RBP12.06□□□□□ -0.48
PHGDH-228ENST00000641847 TSPYL6Q8N831 410 aa12.06□□□□□ -0.48
PHGDH-228ENST00000641847 FMNL2Q96PY5 1086 aa12.06□□□□□ -0.48
PHGDH-228ENST00000641847 ZNF277Q9NRM2 450 aaPredicted RBP12.06□□□□□ -0.48
PHGDH-228ENST00000641847 ZNF541Q9H0D2 1346 aa12.06□□□□□ -0.48
PHGDH-228ENST00000641847 HEG1Q9ULI3 1381 aa12.05□□□□□ -0.48
PHGDH-228ENST00000641847 NPR1P16066 1061 aa12.05□□□□□ -0.48
PHGDH-228ENST00000641847 EIF6P56537 245 aaKnown RBP12.05□□□□□ -0.48
PHGDH-228ENST00000641847 ZNF496Q96IT1 587 aaPredicted RBP12.05□□□□□ -0.48
PHGDH-228ENST00000641847 TSKSQ9UJT2 592 aa12.05□□□□□ -0.48
PHGDH-228ENST00000641847 RCAN3Q9UKA8 241 aa12.05□□□□□ -0.48
PHGDH-228ENST00000641847 TBC1D2BQ9UPU7 963 aa12.05□□□□□ -0.48
PHGDH-228ENST00000641847 FER1L6Q2WGJ9 1857 aa12.05□□□□□ -0.48
PHGDH-228ENST00000641847 FZD9O00144 591 aa12.04□□□□□ -0.48
PHGDH-228ENST00000641847 IARSP41252 1262 aaKnown RBP12.04□□□□□ -0.48
PHGDH-228ENST00000641847 NBPF5PQ86XG9 351 aaPredicted RBP12.04□□□□□ -0.48
PHGDH-228ENST00000641847 GJA3Q9Y6H8 435 aa12.04□□□□□ -0.48
PHGDH-228ENST00000641847 TLL2Q9Y6L7 1015 aa12.04□□□□□ -0.48
PHGDH-228ENST00000641847 VAMP4O75379 141 aa12.03□□□□□ -0.48
PHGDH-228ENST00000641847 HOXB7P09629 217 aa12.03□□□□□ -0.48
PHGDH-228ENST00000641847 IL6STP40189 918 aaPredicted RBP12.03□□□□□ -0.48
PHGDH-228ENST00000641847 BRPF1P55201 1214 aaPredicted RBP12.03□□□□□ -0.48
PHGDH-228ENST00000641847 PRPF38BQ5VTL8 546 aaKnown RBP12.03□□□□□ -0.48
PHGDH-228ENST00000641847 PRAMEF22A3QJZ6 481 aa12.02□□□□□ -0.49
PHGDH-228ENST00000641847 SNRPA1P09661 255 aaKnown RBP12.02□□□□□ -0.49
PHGDH-228ENST00000641847 ALDH1B1P30837 517 aa12.02□□□□□ -0.49
PHGDH-228ENST00000641847 RARSP54136 660 aaKnown RBP12.02□□□□□ -0.49
PHGDH-228ENST00000641847 USP50Q70EL3 339 aaPredicted RBP12.02□□□□□ -0.49
PHGDH-228ENST00000641847 C7orf43Q8WVR3 580 aa12.02□□□□□ -0.49
PHGDH-228ENST00000641847 ZNF428Q96B54 188 aa12.02□□□□□ -0.49
PHGDH-228ENST00000641847 ZNF652Q9Y2D9 606 aa12.02□□□□□ -0.49
PHGDH-228ENST00000641847 AOC2O75106 756 aa12.01□□□□□ -0.49
PHGDH-228ENST00000641847 HDGFL1Q5TGJ6 251 aa12.01□□□□□ -0.49
PHGDH-228ENST00000641847 TPTE2Q6XPS3 522 aa12.01□□□□□ -0.49
PHGDH-228ENST00000641847 SYNE4Q8N205 404 aa12.01□□□□□ -0.49
PHGDH-228ENST00000641847 SSH1Q8WYL5 1049 aa12.01□□□□□ -0.49
PHGDH-228ENST00000641847 HHIPL1Q96JK4 782 aa12.01□□□□□ -0.49
PHGDH-228ENST00000641847 BCL2L13Q9BXK5 485 aa12.01□□□□□ -0.49
PHGDH-228ENST00000641847 SMC4Q9NTJ3 1288 aa12.01□□□□□ -0.49
PHGDH-228ENST00000641847 TCERG1O14776 1098 aaKnown RBP12□□□□□ -0.49
PHGDH-228ENST00000641847 ALDH1L2Q3SY69 923 aa12□□□□□ -0.49
PHGDH-228ENST00000641847 GRIPAP1Q4V328 841 aa12□□□□□ -0.49
PHGDH-228ENST00000641847 CST9Q5W186 159 aa12□□□□□ -0.49
PHGDH-228ENST00000641847 NECTIN2Q92692 538 aa12□□□□□ -0.49
PHGDH-228ENST00000641847 PSMD1Q99460 953 aa12□□□□□ -0.49
PHGDH-228ENST00000641847 BCAR3O75815 825 aa11.99□□□□□ -0.49
PHGDH-228ENST00000641847 CELF2O95319 508 aaKnown RBP11.99□□□□□ -0.49
PHGDH-228ENST00000641847 EIF2S2P20042 333 aaKnown RBP11.99□□□□□ -0.49
PHGDH-228ENST00000641847 GTF2E1P29083 439 aaPredicted RBP11.99□□□□□ -0.49
PHGDH-228ENST00000641847 CCDC30Q5VVM6 783 aa11.99□□□□□ -0.49
PHGDH-228ENST00000641847 CC2D2BQ6DHV5 1058 aa11.99□□□□□ -0.49
PHGDH-228ENST00000641847 CLEC4GQ6UXB4 293 aa11.99□□□□□ -0.49
PHGDH-228ENST00000641847 SAPCD2Q86UD0 394 aa11.99□□□□□ -0.49
PHGDH-228ENST00000641847 DZIP3Q86Y13 1208 aaKnown RBP11.99□□□□□ -0.49
PHGDH-228ENST00000641847 SLX4Q8IY92 1834 aa11.98□□□□□ -0.49
PHGDH-228ENST00000641847 TRAF5O00463 557 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms