RNA–Protein interactions for RNA: ENST00000635988.1

CACNA1A-220, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 2,548 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-220ENST00000635988 CAMK4Q16566 473 aa17.54■□□□□ 0.4
CACNA1A-220ENST00000635988 RNF20Q5VTR2 975 aa17.54■□□□□ 0.4
CACNA1A-220ENST00000635988 DNAAF4Q8WXU2 420 aa17.54■□□□□ 0.4
CACNA1A-220ENST00000635988 TPCN1Q9ULQ1 816 aa17.54■□□□□ 0.4
CACNA1A-220ENST00000635988 CDC25BP30305 580 aa17.54■□□□□ 0.4
CACNA1A-220ENST00000635988 BEND3Q5T5X7 828 aa17.54■□□□□ 0.4
CACNA1A-220ENST00000635988 CREB3L3Q68CJ9 461 aa17.54■□□□□ 0.4
CACNA1A-220ENST00000635988 NECAB1Q8N987 351 aa17.54■□□□□ 0.4
CACNA1A-220ENST00000635988 CCDC112Q8NEF3 446 aa17.54■□□□□ 0.4
CACNA1A-220ENST00000635988 RBM8AQ9Y5S9 174 aaKnown RBP17.54■□□□□ 0.4
CACNA1A-220ENST00000635988 TAF3Q5VWG9 929 aa17.53■□□□□ 0.4
CACNA1A-220ENST00000635988 CDC37L1Q7L3B6 337 aa17.53■□□□□ 0.4
CACNA1A-220ENST00000635988 MAP4K1Q92918 833 aa17.53■□□□□ 0.4
CACNA1A-220ENST00000635988 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.53■□□□□ 0.4
CACNA1A-220ENST00000635988 NEMFO60524 1076 aa17.53■□□□□ 0.4
CACNA1A-220ENST00000635988 IFIT2P09913 472 aaKnown RBP17.53■□□□□ 0.4
CACNA1A-220ENST00000635988 C16orf45Q96MC5 204 aaPredicted RBP17.53■□□□□ 0.4
CACNA1A-220ENST00000635988 GABPB1Q06547 395 aaPredicted RBP17.52■□□□□ 0.4
CACNA1A-220ENST00000635988 CKAP2LQ8IYA6 745 aa17.52■□□□□ 0.4
CACNA1A-220ENST00000635988 CHMP3Q9Y3E7 222 aa17.52■□□□□ 0.4
CACNA1A-220ENST00000635988 ZNF165P49910 485 aa17.52■□□□□ 0.39
CACNA1A-220ENST00000635988 FERMT3Q86UX7 667 aa17.52■□□□□ 0.39
CACNA1A-220ENST00000635988 LEO1Q8WVC0 666 aaPredicted RBP17.52■□□□□ 0.39
CACNA1A-220ENST00000635988 SNRKQ9NRH2 765 aa17.52■□□□□ 0.39
CACNA1A-220ENST00000635988 CTNNA3Q9UI47 895 aa17.52■□□□□ 0.39
CACNA1A-220ENST00000635988 BLOC1S2Q6QNY1 142 aa17.51■□□□□ 0.39
CACNA1A-220ENST00000635988 GIGYF1O75420 1035 aaPredicted RBP17.51■□□□□ 0.39
CACNA1A-220ENST00000635988 LRMPQ12912 555 aa17.51■□□□□ 0.39
CACNA1A-220ENST00000635988 CLIP2Q9UDT6 1046 aa17.51■□□□□ 0.39
CACNA1A-220ENST00000635988 NUTM2FA1L443 756 aa17.5■□□□□ 0.39
CACNA1A-220ENST00000635988 TPD52L1Q16890 204 aaPredicted RBP17.5■□□□□ 0.39
CACNA1A-220ENST00000635988 A0A0U1RQG5 324 aaPredicted RBP17.5■□□□□ 0.39
CACNA1A-220ENST00000635988 SLC27A2O14975 620 aa17.5■□□□□ 0.39
CACNA1A-220ENST00000635988 TMEM2Q9UHN6 1383 aa17.49■□□□□ 0.39
CACNA1A-220ENST00000635988 PI4KAP2A4QPH2 592 aa17.49■□□□□ 0.39
CACNA1A-220ENST00000635988 SARM1Q6SZW1 724 aa17.49■□□□□ 0.39
CACNA1A-220ENST00000635988 PI4KAP1Q8N8J0 262 aa17.49■□□□□ 0.39
CACNA1A-220ENST00000635988 HMG20BQ9P0W2 317 aa17.49■□□□□ 0.39
CACNA1A-220ENST00000635988 NRBP1Q9UHY1 535 aa17.49■□□□□ 0.39
CACNA1A-220ENST00000635988 DDX41Q9UJV9 622 aaKnown RBP17.49■□□□□ 0.39
CACNA1A-220ENST00000635988 BICD2Q8TD16 824 aa17.49■□□□□ 0.39
CACNA1A-220ENST00000635988 ADAMTS13Q76LX8 1427 aa17.48■□□□□ 0.39
CACNA1A-220ENST00000635988 ALDH1L1O75891 902 aa17.48■□□□□ 0.39
CACNA1A-220ENST00000635988 RPS6KB1P23443 525 aa17.48■□□□□ 0.39
CACNA1A-220ENST00000635988 GOLGA6L19H0YKK7 550 aa17.48■□□□□ 0.39
CACNA1A-220ENST00000635988 EIF2S2P20042 333 aaKnown RBP17.48■□□□□ 0.39
CACNA1A-220ENST00000635988 CEP135Q66GS9 1140 aa17.48■□□□□ 0.39
CACNA1A-220ENST00000635988 FAM173BQ6P4H8 233 aa17.48■□□□□ 0.39
CACNA1A-220ENST00000635988 CACTINQ8WUQ7 758 aaKnown RBP17.48■□□□□ 0.39
CACNA1A-220ENST00000635988 MRFAP1L1Q96HT8 127 aa17.48■□□□□ 0.39
CACNA1A-220ENST00000635988 CTAGE5O15320 804 aa17.47■□□□□ 0.39
CACNA1A-220ENST00000635988 HOXC9P31274 260 aa17.47■□□□□ 0.39
CACNA1A-220ENST00000635988 EIF4A1P60842 406 aaKnown RBP17.47■□□□□ 0.39
CACNA1A-220ENST00000635988 LARP1Q6PKG0 1096 aaKnown RBP17.47■□□□□ 0.39
CACNA1A-220ENST00000635988 NGDNQ8NEJ9 315 aaKnown RBP17.47■□□□□ 0.39
CACNA1A-220ENST00000635988 ESF1Q9H501 851 aaKnown RBP17.47■□□□□ 0.39
CACNA1A-220ENST00000635988 TFIP11Q9UBB9 837 aaKnown RBP17.47■□□□□ 0.39
CACNA1A-220ENST00000635988 MORC2Q9Y6X9 1032 aaPredicted RBP17.47■□□□□ 0.39
CACNA1A-220ENST00000635988 RBM6P78332 1123 aaKnown RBP17.47■□□□□ 0.39
CACNA1A-220ENST00000635988 TSGA10IPQ3SY00 556 aa17.47■□□□□ 0.39
CACNA1A-220ENST00000635988 DNAJC25Q9H1X3 360 aa17.47■□□□□ 0.39
CACNA1A-220ENST00000635988 CHPF2Q9P2E5 772 aa17.47■□□□□ 0.39
CACNA1A-220ENST00000635988 CFAP45Q9UL16 551 aa17.47■□□□□ 0.39
CACNA1A-220ENST00000635988 CEMIPQ8WUJ3 1361 aa17.46■□□□□ 0.39
CACNA1A-220ENST00000635988 NMIQ13287 307 aaPredicted RBP17.46■□□□□ 0.39
CACNA1A-220ENST00000635988 AACSQ86V21 672 aa17.46■□□□□ 0.39
CACNA1A-220ENST00000635988 ZSCAN16Q9H4T2 348 aaPredicted RBP17.46■□□□□ 0.39
CACNA1A-220ENST00000635988 NWD1Q149M9 1564 aa17.46■□□□□ 0.39
CACNA1A-220ENST00000635988 NR1I2O75469 434 aa17.46■□□□□ 0.38
CACNA1A-220ENST00000635988 KRT32Q14532 448 aa17.46■□□□□ 0.38
CACNA1A-220ENST00000635988 MLECQ14165 292 aa17.45■□□□□ 0.38
CACNA1A-220ENST00000635988 ZNF771Q7L3S4 317 aaPredicted RBP17.45■□□□□ 0.38
CACNA1A-220ENST00000635988 LRRC8AQ8IWT6 810 aa17.45■□□□□ 0.38
CACNA1A-220ENST00000635988 DDX54Q8TDD1 881 aaKnown RBP17.45■□□□□ 0.38
CACNA1A-220ENST00000635988 C9orf78Q9NZ63 289 aaPredicted RBP17.45■□□□□ 0.38
CACNA1A-220ENST00000635988 DTNBO60941 627 aa17.45■□□□□ 0.38
CACNA1A-220ENST00000635988 FGD1P98174 961 aa17.45■□□□□ 0.38
CACNA1A-220ENST00000635988 PGBD1Q96JS3 809 aa17.45■□□□□ 0.38
CACNA1A-220ENST00000635988 FAM227BQ96M60 508 aa17.45■□□□□ 0.38
CACNA1A-220ENST00000635988 TOB2Q14106 344 aaPredicted RBP17.44■□□□□ 0.38
CACNA1A-220ENST00000635988 PLPPR3Q6T4P5 718 aa17.44■□□□□ 0.38
CACNA1A-220ENST00000635988 ZNF397Q8NF99 534 aaPredicted RBP17.44■□□□□ 0.38
CACNA1A-220ENST00000635988 ADCY9O60503 1353 aa17.44■□□□□ 0.38
CACNA1A-220ENST00000635988 TNRQ92752 1358 aa17.44■□□□□ 0.38
CACNA1A-220ENST00000635988 PLEKHG1Q9ULL1 1385 aa17.44■□□□□ 0.38
CACNA1A-220ENST00000635988 NLRP6P59044 892 aa17.44■□□□□ 0.38
CACNA1A-220ENST00000635988 KIF18AQ8NI77 898 aa17.44■□□□□ 0.38
CACNA1A-220ENST00000635988 KIF2AO00139 706 aaPredicted RBP17.43■□□□□ 0.38
CACNA1A-220ENST00000635988 IQCB1Q15051 598 aa17.43■□□□□ 0.38
CACNA1A-220ENST00000635988 PTPN14Q15678 1187 aa17.43■□□□□ 0.38
CACNA1A-220ENST00000635988 STX1AQ16623 288 aa17.43■□□□□ 0.38
CACNA1A-220ENST00000635988 NPHP4O75161 1426 aaPredicted RBP17.43■□□□□ 0.38
CACNA1A-220ENST00000635988 DIP2BQ9P265 1576 aa17.43■□□□□ 0.38
CACNA1A-220ENST00000635988 RESTQ13127 1097 aa17.43■□□□□ 0.38
CACNA1A-220ENST00000635988 CCDC144BQ3MJ40 725 aa17.43■□□□□ 0.38
CACNA1A-220ENST00000635988 CCDC144CPQ8IYA2 1237 aa17.43■□□□□ 0.38
CACNA1A-220ENST00000635988 DBF4Q9UBU7 674 aaPredicted RBP17.43■□□□□ 0.38
CACNA1A-220ENST00000635988 JCADQ9P266 1359 aa17.42■□□□□ 0.38
CACNA1A-220ENST00000635988 MED23Q9ULK4 1368 aa17.42■□□□□ 0.38
CACNA1A-220ENST00000635988 G3BP1Q13283 466 aaKnown RBP eCLIP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms