RNA–Protein interactions for RNA: ENST00000629427.2

SHPRH-211, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SHPRH, Length 7,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-211ENST00000629427 USP16Q9Y5T5 823 aa13.53□□□□□ -0.24
SHPRH-211ENST00000629427 PABPN1LA6NDY0 278 aaKnown RBP13.53□□□□□ -0.24
SHPRH-211ENST00000629427 IARSP41252 1262 aaKnown RBP13.53□□□□□ -0.24
SHPRH-211ENST00000629427 CCDC152Q4G0S7 254 aa13.53□□□□□ -0.24
SHPRH-211ENST00000629427 SPECC1Q5M775 1068 aa13.53□□□□□ -0.24
SHPRH-211ENST00000629427 ACSBG1Q96GR2 724 aa13.53□□□□□ -0.24
SHPRH-211ENST00000629427 PLEKHH1Q9ULM0 1364 aa13.53□□□□□ -0.24
SHPRH-211ENST00000629427 NCAPD3P42695 1498 aa13.52□□□□□ -0.24
SHPRH-211ENST00000629427 TOP2BQ02880 1626 aa13.52□□□□□ -0.24
SHPRH-211ENST00000629427 UBA7P41226 1012 aa13.52□□□□□ -0.24
SHPRH-211ENST00000629427 HLTFQ14527 1009 aaKnown RBP eCLIP13.52□□□□□ -0.243e-6■■□□□ 13
SHPRH-211ENST00000629427 ZNF354CQ86Y25 554 aa13.52□□□□□ -0.24
SHPRH-211ENST00000629427 RAB11FIP4Q86YS3 637 aa13.52□□□□□ -0.24
SHPRH-211ENST00000629427 FERMT1Q9BQL6 677 aa13.52□□□□□ -0.24
SHPRH-211ENST00000629427 PANK2Q9BZ23 570 aa13.52□□□□□ -0.24
SHPRH-211ENST00000629427 CRNKL1Q9BZJ0 848 aaKnown RBP13.52□□□□□ -0.24
SHPRH-211ENST00000629427 STX8Q9UNK0 236 aa13.52□□□□□ -0.24
SHPRH-211ENST00000629427 SHTN1A0MZ66 631 aa13.52□□□□□ -0.24
SHPRH-211ENST00000629427 TSPY3P0CV98 308 aa13.52□□□□□ -0.24
SHPRH-211ENST00000629427 TSPY8P0CW00 308 aa13.52□□□□□ -0.24
SHPRH-211ENST00000629427 RARSP54136 660 aaKnown RBP13.52□□□□□ -0.25
SHPRH-211ENST00000629427 GSTO1P78417 241 aa13.52□□□□□ -0.25
SHPRH-211ENST00000629427 CCDC174Q6PII3 467 aa13.52□□□□□ -0.25
SHPRH-211ENST00000629427 SETDB2Q96T68 719 aa13.52□□□□□ -0.25
SHPRH-211ENST00000629427 TRMT1Q9NXH9 659 aaKnown RBP13.52□□□□□ -0.25
SHPRH-211ENST00000629427 CCDC184Q52MB2 194 aa13.52□□□□□ -0.25
SHPRH-211ENST00000629427 FLIIQ13045 1269 aa13.52□□□□□ -0.25
SHPRH-211ENST00000629427 TFIP11Q9UBB9 837 aaKnown RBP13.52□□□□□ -0.25
SHPRH-211ENST00000629427 SYNCQ9H7C4 482 aa13.51□□□□□ -0.25
SHPRH-211ENST00000629427 CHRNA2Q15822 529 aa13.51□□□□□ -0.25
SHPRH-211ENST00000629427 GJB2P29033 226 aa13.51□□□□□ -0.25
SHPRH-211ENST00000629427 ABCC11Q96J66 1382 aa13.51□□□□□ -0.25
SHPRH-211ENST00000629427 KIF2AO00139 706 aaPredicted RBP13.51□□□□□ -0.25
SHPRH-211ENST00000629427 PLS1Q14651 629 aa13.51□□□□□ -0.25
SHPRH-211ENST00000629427 ALS2CR12Q96Q35 445 aa13.51□□□□□ -0.25
SHPRH-211ENST00000629427 PPFIA3O75145 1194 aa13.51□□□□□ -0.25
SHPRH-211ENST00000629427 GIGYF2Q6Y7W6 1299 aaKnown RBP13.51□□□□□ -0.25
SHPRH-211ENST00000629427 FAM114A1Q8IWE2 563 aa13.51□□□□□ -0.25
SHPRH-211ENST00000629427 ADGRL1O94910 1474 aa13.51□□□□□ -0.25
SHPRH-211ENST00000629427 CEP63Q96MT8 703 aa13.5□□□□□ -0.25
SHPRH-211ENST00000629427 DMRT2Q9Y5R5 561 aa13.5□□□□□ -0.25
SHPRH-211ENST00000629427 ECM2O94769 699 aaPredicted RBP13.5□□□□□ -0.25
SHPRH-211ENST00000629427 C16orf71Q8IYS4 520 aaPredicted RBP13.5□□□□□ -0.25
SHPRH-211ENST00000629427 NCOA7Q8NI08 942 aa13.5□□□□□ -0.25
SHPRH-211ENST00000629427 ANKRD24Q8TF21 1146 aa13.5□□□□□ -0.25
SHPRH-211ENST00000629427 CAMSAP2Q08AD1 1489 aa13.5□□□□□ -0.25
SHPRH-211ENST00000629427 IFIT1BQ5T764 474 aaKnown RBP13.5□□□□□ -0.25
SHPRH-211ENST00000629427 FBXO31Q5XUX0 539 aaPredicted RBP13.5□□□□□ -0.25
SHPRH-211ENST00000629427 UTP14AQ9BVJ6 771 aaKnown RBP13.5□□□□□ -0.25
SHPRH-211ENST00000629427 SSX2IPQ9Y2D8 614 aa13.5□□□□□ -0.25
SHPRH-211ENST00000629427 ATP6V1AP38606 617 aa13.5□□□□□ -0.25
SHPRH-211ENST00000629427 OGFOD1Q8N543 542 aa13.5□□□□□ -0.25
SHPRH-211ENST00000629427 EXOC1Q9NV70 894 aa13.5□□□□□ -0.25
SHPRH-211ENST00000629427 STX6O43752 255 aa13.5□□□□□ -0.25
SHPRH-211ENST00000629427 PDCL2Q8N4E4 241 aa13.49□□□□□ -0.25
SHPRH-211ENST00000629427 HDAC9Q9UKV0 1011 aa13.49□□□□□ -0.25
SHPRH-211ENST00000629427 MRPS9P82933 396 aaKnown RBP13.49□□□□□ -0.25
SHPRH-211ENST00000629427 NAA15Q9BXJ9 866 aaKnown RBP13.49□□□□□ -0.25
SHPRH-211ENST00000629427 TBC1D5Q92609 795 aa13.49□□□□□ -0.25
SHPRH-211ENST00000629427 PI4KAP2A4QPH2 592 aa13.49□□□□□ -0.25
SHPRH-211ENST00000629427 TMC6Q7Z403 805 aa13.49□□□□□ -0.25
SHPRH-211ENST00000629427 PI4KAP1Q8N8J0 262 aa13.49□□□□□ -0.25
SHPRH-211ENST00000629427 TSNARE1Q96NA8 513 aa13.49□□□□□ -0.25
SHPRH-211ENST00000629427 DNMBPQ6XZF7 1577 aa13.49□□□□□ -0.25
SHPRH-211ENST00000629427 TTC21BQ7Z4L5 1316 aa13.49□□□□□ -0.25
SHPRH-211ENST00000629427 TBCAO75347 108 aaKnown RBP13.49□□□□□ -0.25
SHPRH-211ENST00000629427 SNRPA1P09661 255 aaKnown RBP13.49□□□□□ -0.25
SHPRH-211ENST00000629427 NEK1Q96PY6 1258 aa13.49□□□□□ -0.25
SHPRH-211ENST00000629427 MAGI1Q96QZ7 1491 aaPredicted RBP13.49□□□□□ -0.25
SHPRH-211ENST00000629427 PICALMQ13492 652 aa13.48□□□□□ -0.25
SHPRH-211ENST00000629427 ECHDC1Q9NTX5 307 aa13.48□□□□□ -0.25
SHPRH-211ENST00000629427 ORC3Q9UBD5 711 aaPredicted RBP13.48□□□□□ -0.25
SHPRH-211ENST00000629427 FSD2A1L4K1 749 aa13.48□□□□□ -0.25
SHPRH-211ENST00000629427 KANK3Q6NY19 840 aa13.48□□□□□ -0.25
SHPRH-211ENST00000629427 PYM1Q9BRP8 204 aaKnown RBP13.48□□□□□ -0.25
SHPRH-211ENST00000629427 WTAPQ15007 396 aa13.48□□□□□ -0.25
SHPRH-211ENST00000629427 STX1AQ16623 288 aa13.48□□□□□ -0.25
SHPRH-211ENST00000629427 TSHZ3Q63HK5 1081 aa13.48□□□□□ -0.25
SHPRH-211ENST00000629427 ZGPATQ8N5A5 531 aaKnown RBP13.48□□□□□ -0.25
SHPRH-211ENST00000629427 PPM1EQ8WY54 764 aa13.48□□□□□ -0.25
SHPRH-211ENST00000629427 CUL7Q14999 1698 aa13.48□□□□□ -0.25
SHPRH-211ENST00000629427 PCF11O94913 1555 aaKnown RBP13.48□□□□□ -0.25
SHPRH-211ENST00000629427 PHACTR2O75167 634 aa13.48□□□□□ -0.25
SHPRH-211ENST00000629427 CYP7A1P22680 504 aa13.47□□□□□ -0.25
SHPRH-211ENST00000629427 HEATR3Q7Z4Q2 680 aa13.47□□□□□ -0.25
SHPRH-211ENST00000629427 GDPD2Q9HCC8 539 aa13.47□□□□□ -0.25
SHPRH-211ENST00000629427 ESPNB1AK53 854 aa13.47□□□□□ -0.25
SHPRH-211ENST00000629427 ACTN2P35609 894 aa13.47□□□□□ -0.25
SHPRH-211ENST00000629427 WWC3Q9ULE0 1092 aa13.47□□□□□ -0.25
SHPRH-211ENST00000629427 IL27Q8NEV9 243 aa13.47□□□□□ -0.25
SHPRH-211ENST00000629427 MCM5P33992 734 aa13.47□□□□□ -0.25
SHPRH-211ENST00000629427 LRRC27Q9C0I9 530 aa13.47□□□□□ -0.25
SHPRH-211ENST00000629427 FERP16591 822 aa13.47□□□□□ -0.25
SHPRH-211ENST00000629427 SMC1AQ14683 1233 aaKnown RBP13.47□□□□□ -0.25
SHPRH-211ENST00000629427 JADE2Q9NQC1 790 aa13.47□□□□□ -0.25
SHPRH-211ENST00000629427 IQSEC3Q9UPP2 1182 aaPredicted RBP13.47□□□□□ -0.25
SHPRH-211ENST00000629427 ANKRD13DQ6ZTN6 518 aa13.47□□□□□ -0.25
SHPRH-211ENST00000629427 PIK3R4Q99570 1358 aa13.46□□□□□ -0.25
SHPRH-211ENST00000629427 RNF187Q5TA31 235 aaPredicted RBP13.46□□□□□ -0.25
SHPRH-211ENST00000629427 C8orf37Q96NL8 207 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms