RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 SPAG1Q07617 926 aa10.22□□□□□ -0.77
VCL-206ENST00000623461 CCDC129Q6ZRS4 1044 aa10.22□□□□□ -0.77
VCL-206ENST00000623461 MRC2Q9UBG0 1479 aa10.22□□□□□ -0.77
VCL-206ENST00000623461 FSD2A1L4K1 749 aa10.22□□□□□ -0.77
VCL-206ENST00000623461 KIF5BP33176 963 aa10.22□□□□□ -0.77
VCL-206ENST00000623461 DNM1Q05193 864 aaKnown RBP10.22□□□□□ -0.77
VCL-206ENST00000623461 CCDC155Q8N6L0 562 aa10.22□□□□□ -0.77
VCL-206ENST00000623461 CDK19Q9BWU1 502 aa10.22□□□□□ -0.77
VCL-206ENST00000623461 IMPACTQ9P2X3 320 aa10.22□□□□□ -0.77
VCL-206ENST00000623461 SYKP43405 635 aa10.22□□□□□ -0.77
VCL-206ENST00000623461 PBRM1Q86U86 1689 aa10.22□□□□□ -0.77
VCL-206ENST00000623461 ASXL1Q8IXJ9 1541 aa10.22□□□□□ -0.77
VCL-206ENST00000623461 ATL3Q6DD88 541 aa10.22□□□□□ -0.77
VCL-206ENST00000623461 DDX12PQ92771 950 aa10.22□□□□□ -0.77
VCL-206ENST00000623461 FAM177BA6PVY3 158 aa10.21□□□□□ -0.77
VCL-206ENST00000623461 PPP2R3AQ06190 1150 aa10.21□□□□□ -0.77
VCL-206ENST00000623461 DRC1Q96MC2 740 aa10.21□□□□□ -0.77
VCL-206ENST00000623461 NEK1Q96PY6 1258 aa10.21□□□□□ -0.77
VCL-206ENST00000623461 PRAM1Q96QH2 718 aa10.21□□□□□ -0.77
VCL-206ENST00000623461 GNL3LQ9NVN8 582 aaKnown RBP10.21□□□□□ -0.77
VCL-206ENST00000623461 IQGAP2Q13576 1575 aa10.21□□□□□ -0.77
VCL-206ENST00000623461 KRT83P78385 493 aa10.21□□□□□ -0.77
VCL-206ENST00000623461 GUCY1B3Q02153 619 aa10.21□□□□□ -0.77
VCL-206ENST00000623461 SSRP1Q08945 709 aaKnown RBP10.21□□□□□ -0.78
VCL-206ENST00000623461 SF3B2Q13435 895 aaKnown RBP10.21□□□□□ -0.78
VCL-206ENST00000623461 ECHDC1Q9NTX5 307 aa10.21□□□□□ -0.78
VCL-206ENST00000623461 CAMSAP2Q08AD1 1489 aa10.21□□□□□ -0.78
VCL-206ENST00000623461 RBM42Q9BTD8 480 aaKnown RBP10.21□□□□□ -0.78
VCL-206ENST00000623461 SEPT11Q9NVA2 429 aaKnown RBP10.21□□□□□ -0.78
VCL-206ENST00000623461 VGLL3A8MV65 326 aa10.21□□□□□ -0.78
VCL-206ENST00000623461 PPP1R12BO60237 982 aaPredicted RBP10.21□□□□□ -0.78
VCL-206ENST00000623461 PHF23Q9BUL5 403 aaPredicted RBP10.21□□□□□ -0.78
VCL-206ENST00000623461 RMND1Q9NWS8 449 aa10.21□□□□□ -0.78
VCL-206ENST00000623461 SCAF11Q99590 1463 aaKnown RBP10.21□□□□□ -0.78
VCL-206ENST00000623461 INPP5BP32019 993 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 PSME1Q06323 249 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 USP26Q9BXU7 913 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 KIF14Q15058 1648 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 ARHGAP25P42331 645 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 HYPKQ9NX55 129 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 SYNJ2O15056 1496 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 FKBP4Q02790 459 aaKnown RBP eCLIP10.2□□□□□ -0.78
VCL-206ENST00000623461 ANKRD44Q8N8A2 993 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 CNNM1Q9NRU3 951 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 CABP1Q9NZU7 370 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 MAP2K2P36507 400 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 LMBRD1Q9NUN5 540 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 SPG7Q9UQ90 795 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 TACC1O75410 805 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 PDE1AP54750 535 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 TDRD12Q587J7 1177 aaKnown RBP10.2□□□□□ -0.78
VCL-206ENST00000623461 CEP126Q9P2H0 1117 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 N4BP3O15049 544 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 NAA25Q14CX7 972 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 CCDC6Q16204 474 aa10.2□□□□□ -0.78
VCL-206ENST00000623461 ELF2Q15723 593 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 KIF6Q6ZMV9 814 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 SCLT1Q96NL6 688 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 MTIF2P46199 727 aaKnown RBP10.19□□□□□ -0.78
VCL-206ENST00000623461 NLRP6P59044 892 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 KRT86O43790 486 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 ZNF75DP51815 510 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 FMNL3Q8IVF7 1028 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 ZGPATQ8N5A5 531 aaKnown RBP10.19□□□□□ -0.78
VCL-206ENST00000623461 ABCC5O15440 1437 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 RTL1A6NKG5 1358 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 STAMBPO95630 424 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 ZSCAN26Q16670 478 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 BOLA2Q9H3K6 86 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 ZHX3Q9H4I2 956 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 ZMYM4Q5VZL5 1548 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 LARP6Q9BRS8 491 aaKnown RBP10.19□□□□□ -0.78
VCL-206ENST00000623461 SELENOOQ9BVL4 669 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 ANKRD24Q8TF21 1146 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 TTC14Q96N46 770 aa10.19□□□□□ -0.78
VCL-206ENST00000623461 GOLGA8BA8MQT2 603 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 AKAP2Q9Y2D5 859 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 EPRSP07814 1512 aaKnown RBP10.18□□□□□ -0.78
VCL-206ENST00000623461 GNAT3A8MTJ3 354 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 WDR66Q8TBY9 1149 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 FBF1Q8TES7 1133 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 GSTTP1A0A1W2PQM5 241 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 ATP2C2O75185 946 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 KIF4AO95239 1232 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 AMPD3Q01432 767 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 CEP63Q96MT8 703 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 MPHOSPH8Q99549 860 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 OAS2P29728 719 aaKnown RBP10.18□□□□□ -0.78
VCL-206ENST00000623461 IFNKQ9P0W0 207 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 BMP15O95972 392 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 PAIP2Q9BPZ3 127 aaKnown RBP10.18□□□□□ -0.78
VCL-206ENST00000623461 DISP3Q9P2K9 1392 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 POTEJP0CG39 1038 aa10.18□□□□□ -0.78
VCL-206ENST00000623461 ORC3Q9UBD5 711 aaPredicted RBP10.18□□□□□ -0.78
VCL-206ENST00000623461 RTEL1-TNFRSF6BF6WH68 1400 aa10.17□□□□□ -0.78
VCL-206ENST00000623461 MATR3P43243 847 aaKnown RBP eCLIP10.17□□□□□ -0.784e-6■■■□□ 16.6
VCL-206ENST00000623461 VAV2P52735 878 aa10.17□□□□□ -0.78
VCL-206ENST00000623461 CCT2P78371 535 aaKnown RBP10.17□□□□□ -0.78
VCL-206ENST00000623461 ZNF569Q5MCW4 686 aa10.17□□□□□ -0.78
VCL-206ENST00000623461 ABCA10Q8WWZ4 1543 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 436.7 ms