RNA–Protein interactions for RNA: ENST00000604740.5

LAMA4-222, Transcript of laminin subunit alpha 4, human

TSL 2

Gene LAMA4, Length 694 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LAMA4-222	ENST00000604740	USP17L12	C9JPN9	530 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	USP17L11	C9JVI0	530 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	USP17L21	D6R901	530 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	USP17L18	D6R9N7	530 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	USP17L22	D6RA61	530 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	USP17L17	D6RBQ6	530 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	USP17L19	D6RCP7	530 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	USP17L20	D6RJB6	530 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	ALB	P02768	609 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	TBC1D8B	Q0IIM8	1120 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	USP17L24	Q0WX57	530 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	PTK7	Q13308	1070 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	BTLA	Q7Z6A9	289 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	LMOD1	P29536	600 aa	Predicted RBP	8.32	□□□□□ -1.08
LAMA4-222	ENST00000604740	PRRT3	Q5FWE3	981 aa		8.32	□□□□□ -1.08
LAMA4-222	ENST00000604740	KANK4	Q5T7N3	995 aa	Predicted RBP	8.32	□□□□□ -1.08
LAMA4-222	ENST00000604740	STARD13	Q9Y3M8	1113 aa		8.32	□□□□□ -1.08
LAMA4-222	ENST00000604740	FAM196B	A6NMK8	535 aa		8.31	□□□□□ -1.08
LAMA4-222	ENST00000604740	RTN1	Q16799	776 aa		8.31	□□□□□ -1.08
LAMA4-222	ENST00000604740	C8orf86	Q6ZUL3	223 aa		8.31	□□□□□ -1.08
LAMA4-222	ENST00000604740	ANKMY2	Q8IV38	441 aa		8.31	□□□□□ -1.08
LAMA4-222	ENST00000604740	MICALL1	Q8N3F8	863 aa		8.31	□□□□□ -1.08
LAMA4-222	ENST00000604740	UBE2O	Q9C0C9	1292 aa	Known RBP	8.31	□□□□□ -1.08
LAMA4-222	ENST00000604740	VRTN	Q9H8Y1	702 aa		8.31	□□□□□ -1.08
LAMA4-222	ENST00000604740	FAM229A	H3BQW9	127 aa		8.3	□□□□□ -1.08
LAMA4-222	ENST00000604740	IGFLR1	Q9H665	355 aa		8.3	□□□□□ -1.08
LAMA4-222	ENST00000604740	IGFBP4	P22692	258 aa		8.29	□□□□□ -1.08
LAMA4-222	ENST00000604740	PRDM6	Q9NQX0	595 aa		8.29	□□□□□ -1.08
LAMA4-222	ENST00000604740	TGFBR3L	H3BV60	316 aa		8.28	□□□□□ -1.08
LAMA4-222	ENST00000604740	APBA3	O96018	575 aa		8.28	□□□□□ -1.08
LAMA4-222	ENST00000604740	GATA4	P43694	442 aa		8.28	□□□□□ -1.08
LAMA4-222	ENST00000604740	COL9A3	Q14050	684 aa	Predicted RBP	8.28	□□□□□ -1.08
LAMA4-222	ENST00000604740	DOC2B	Q14184	412 aa		8.28	□□□□□ -1.08
LAMA4-222	ENST00000604740	IER5	Q5VY09	327 aa		8.28	□□□□□ -1.08
LAMA4-222	ENST00000604740	PNMA5	Q96PV4	448 aa		8.28	□□□□□ -1.08
LAMA4-222	ENST00000604740	SLC6A14	Q9UN76	642 aa		8.27	□□□□□ -1.09
LAMA4-222	ENST00000604740	LILRB5	O75023	590 aa		8.26	□□□□□ -1.09
LAMA4-222	ENST00000604740	NID1	P14543	1247 aa		8.26	□□□□□ -1.09
LAMA4-222	ENST00000604740	TRIM28	Q13263	835 aa	Known RBP	8.26	□□□□□ -1.09
LAMA4-222	ENST00000604740	C20orf204	Q6ZNR8	217 aa		8.26	□□□□□ -1.09
LAMA4-222	ENST00000604740	KLK14	Q9P0G3	267 aa		8.26	□□□□□ -1.09
LAMA4-222	ENST00000604740	BCS1L	Q9Y276	419 aa		8.26	□□□□□ -1.09
LAMA4-222	ENST00000604740	EPB42	P16452	691 aa		8.25	□□□□□ -1.09
LAMA4-222	ENST00000604740	NFKB1	P19838	968 aa		8.25	□□□□□ -1.09
LAMA4-222	ENST00000604740	VTI1A	Q96AJ9	217 aa		8.25	□□□□□ -1.09
LAMA4-222	ENST00000604740	ARX	Q96QS3	562 aa		8.25	□□□□□ -1.09
LAMA4-222	ENST00000604740	GSX2	Q9BZM3	304 aa		8.25	□□□□□ -1.09
LAMA4-222	ENST00000604740	EFCC1	Q9HA90	598 aa		8.25	□□□□□ -1.09
LAMA4-222	ENST00000604740	JPH1	Q9HDC5	661 aa	Predicted RBP	8.25	□□□□□ -1.09
LAMA4-222	ENST00000604740	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	8.25	□□□□□ -1.09
LAMA4-222	ENST00000604740	IDH3A	P50213	366 aa		8.24	□□□□□ -1.09
LAMA4-222	ENST00000604740	DGKZ	Q13574	1117 aa		8.24	□□□□□ -1.09
LAMA4-222	ENST00000604740	CCIN	Q13939	588 aa		8.24	□□□□□ -1.09
LAMA4-222	ENST00000604740	CFAP70	Q5T0N1	1121 aa		8.24	□□□□□ -1.09
LAMA4-222	ENST00000604740	TRAPPC3L	Q5T215	181 aa		8.24	□□□□□ -1.09
LAMA4-222	ENST00000604740	NUDT8	Q8WV74	236 aa		8.24	□□□□□ -1.09
LAMA4-222	ENST00000604740	DNAJB12	Q9NXW2	375 aa	Known RBP	8.24	□□□□□ -1.09
LAMA4-222	ENST00000604740	DMGDH	Q9UI17	866 aa	Known RBP	8.24	□□□□□ -1.09
LAMA4-222	ENST00000604740	ZNF777	Q9ULD5	760 aa	Predicted RBP	8.24	□□□□□ -1.09
LAMA4-222	ENST00000604740	FOXO3	O43524	673 aa		8.23	□□□□□ -1.09
LAMA4-222	ENST00000604740	GRIK4	Q16099	956 aa		8.23	□□□□□ -1.09
LAMA4-222	ENST00000604740	CDCA8	Q53HL2	280 aa		8.23	□□□□□ -1.09
LAMA4-222	ENST00000604740	NACC1	Q96RE7	527 aa		8.23	□□□□□ -1.09
LAMA4-222	ENST00000604740	SEMA6B	Q9H3T3	888 aa		8.23	□□□□□ -1.09
LAMA4-222	ENST00000604740	QTRT2	Q9H974	415 aa	Known RBP	8.23	□□□□□ -1.09
LAMA4-222	ENST00000604740	WEE1	P30291	646 aa		8.22	□□□□□ -1.09
LAMA4-222	ENST00000604740	XP32	Q5T750	250 aa		8.22	□□□□□ -1.09
LAMA4-222	ENST00000604740	PSAPL1	Q6NUJ1	521 aa		8.22	□□□□□ -1.09
LAMA4-222	ENST00000604740	KRT25	Q7Z3Z0	450 aa		8.22	□□□□□ -1.09
LAMA4-222	ENST00000604740	FAM200A	Q8TCP9	573 aa		8.22	□□□□□ -1.09
LAMA4-222	ENST00000604740	NAGPA	Q9UK23	515 aa		8.22	□□□□□ -1.09
LAMA4-222	ENST00000604740	RFX1	P22670	979 aa		8.21	□□□□□ -1.1
LAMA4-222	ENST00000604740	GRN	P28799	593 aa	Known RBP	8.21	□□□□□ -1.1
LAMA4-222	ENST00000604740	INPP5B	P32019	993 aa		8.21	□□□□□ -1.1
LAMA4-222	ENST00000604740	ARSD	P51689	593 aa		8.21	□□□□□ -1.1
LAMA4-222	ENST00000604740		A0A0A0MRY4	1105 aa		8.19	□□□□□ -1.1
LAMA4-222	ENST00000604740	RGS9	O75916	674 aa	Predicted RBP	8.19	□□□□□ -1.1
LAMA4-222	ENST00000604740	C11orf91	Q3C1V1	193 aa		8.19	□□□□□ -1.1
LAMA4-222	ENST00000604740	FAM35A	Q86V20	835 aa		8.19	□□□□□ -1.1
LAMA4-222	ENST00000604740	TPSG1	Q9NRR2	321 aa		8.19	□□□□□ -1.1
LAMA4-222	ENST00000604740	NOVA2	Q9UNW9	492 aa	Known RBP	8.19	□□□□□ -1.1
LAMA4-222	ENST00000604740	MICAL2	O94851	1124 aa		8.18	□□□□□ -1.1
LAMA4-222	ENST00000604740	CPB1	P15086	417 aa		8.18	□□□□□ -1.1
LAMA4-222	ENST00000604740	ITGB7	P26010	798 aa		8.18	□□□□□ -1.1
LAMA4-222	ENST00000604740	AFF1	P51825	1210 aa	Known RBP	8.18	□□□□□ -1.1
LAMA4-222	ENST00000604740	RAC1	P63000	192 aa		8.18	□□□□□ -1.1
LAMA4-222	ENST00000604740		Q8N3U1	123 aa		8.18	□□□□□ -1.1
LAMA4-222	ENST00000604740	MYO19	Q96H55	970 aa		8.18	□□□□□ -1.1
LAMA4-222	ENST00000604740	RARA	P10276	462 aa		8.17	□□□□□ -1.1
LAMA4-222	ENST00000604740	ELN	P15502	786 aa		8.17	□□□□□ -1.1
LAMA4-222	ENST00000604740	PCSK7	Q16549	785 aa		8.17	□□□□□ -1.1
LAMA4-222	ENST00000604740	RSPO4	Q2I0M5	234 aa	Predicted RBP	8.17	□□□□□ -1.1
LAMA4-222	ENST00000604740	DHX32	Q7L7V1	743 aa	Known RBP	8.17	□□□□□ -1.1
LAMA4-222	ENST00000604740	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	8.17	□□□□□ -1.1
LAMA4-222	ENST00000604740	ZFAT	Q9P243	1243 aa		8.17	□□□□□ -1.1
LAMA4-222	ENST00000604740	C9orf172	C9J069	976 aa		8.16	□□□□□ -1.1
LAMA4-222	ENST00000604740	SASH3	O75995	380 aa		8.16	□□□□□ -1.1
LAMA4-222	ENST00000604740	MAP3K6	O95382	1288 aa		8.16	□□□□□ -1.1
LAMA4-222	ENST00000604740	TARS	P26639	723 aa	Known RBP	8.16	□□□□□ -1.1
LAMA4-222	ENST00000604740	MLLT1	Q03111	559 aa	Predicted RBP	8.16	□□□□□ -1.1

Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms