RNA–Protein interactions for RNA: ENST00000604740.5

LAMA4-222, Transcript of laminin subunit alpha 4, human

TSL 2

Gene LAMA4, Length 694 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LAMA4-222	ENST00000604740	AEBP2	Q6ZN18	517 aa	Predicted RBP	26.54	■■□□□ 1.84
LAMA4-222	ENST00000604740	CHIC1	Q5VXU3	224 aa		25.41	■■□□□ 1.66
LAMA4-222	ENST00000604740	SENP3	Q9H4L4	574 aa	Predicted RBP	22.63	■■□□□ 1.21
LAMA4-222	ENST00000604740	PHF23	Q9BUL5	403 aa	Predicted RBP	22.35	■■□□□ 1.17
LAMA4-222	ENST00000604740	FOXD1	Q16676	465 aa		21.05	■□□□□ 0.96
LAMA4-222	ENST00000604740	PLPPR3	Q6T4P5	718 aa		20.41	■□□□□ 0.86
LAMA4-222	ENST00000604740	PPP6R1	Q9UPN7	881 aa		19.83	■□□□□ 0.77
LAMA4-222	ENST00000604740	ADRA2B	P18089	450 aa		19.81	■□□□□ 0.76
LAMA4-222	ENST00000604740	PIAS4	Q8N2W9	510 aa	Predicted RBP	19.77	■□□□□ 0.76
LAMA4-222	ENST00000604740	MSH5	O43196	834 aa		19.64	■□□□□ 0.73
LAMA4-222	ENST00000604740	POTED	Q86YR6	584 aa		18.81	■□□□□ 0.6
LAMA4-222	ENST00000604740	SCAF1	Q9H7N4	1312 aa	Known RBP	18.13	■□□□□ 0.49
LAMA4-222	ENST00000604740	MAPK8IP2	Q13387	824 aa	Predicted RBP	18.12	■□□□□ 0.49
LAMA4-222	ENST00000604740	DMRT2	Q9Y5R5	561 aa		17.96	■□□□□ 0.47
LAMA4-222	ENST00000604740	PPP4R3CP	Q6ZMV5	832 aa		17.92	■□□□□ 0.46
LAMA4-222	ENST00000604740	CNKSR2	Q8WXI2	1034 aa		17.53	■□□□□ 0.4
LAMA4-222	ENST00000604740	HOXD11	P31277	338 aa	Predicted RBP	17.37	■□□□□ 0.37
LAMA4-222	ENST00000604740	RNF216	Q9NWF9	866 aa	Predicted RBP	17.31	■□□□□ 0.36
LAMA4-222	ENST00000604740	DCAF8L1	A6NGE4	600 aa		17.3	■□□□□ 0.36
LAMA4-222	ENST00000604740	NCBP3	Q53F19	620 aa	Known RBP	17.3	■□□□□ 0.36
LAMA4-222	ENST00000604740	NPM3	O75607	178 aa	Known RBP	17.04	■□□□□ 0.32
LAMA4-222	ENST00000604740	KCNA4	P22459	653 aa		16.91	■□□□□ 0.3
LAMA4-222	ENST00000604740	RNF39	Q9H2S5	420 aa		16.76	■□□□□ 0.27
LAMA4-222	ENST00000604740	CACNB1	Q02641	598 aa	Predicted RBP	16.75	■□□□□ 0.27
LAMA4-222	ENST00000604740	DNAJC5B	Q9UF47	199 aa		16.69	■□□□□ 0.26
LAMA4-222	ENST00000604740	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	16.61	■□□□□ 0.25
LAMA4-222	ENST00000604740	C1QBP	Q07021	282 aa	Known RBP	16.53	■□□□□ 0.24
LAMA4-222	ENST00000604740		U3KPZ7	1027 aa	Predicted RBP	16.26	■□□□□ 0.19
LAMA4-222	ENST00000604740	SLC4A2	P04920	1241 aa		16.2	■□□□□ 0.18
LAMA4-222	ENST00000604740	SLC4A1AP	Q9BWU0	796 aa	Known RBP	16.02	■□□□□ 0.16
LAMA4-222	ENST00000604740	SPINK5	Q9NQ38	1064 aa	Predicted RBP	15.97	■□□□□ 0.15
LAMA4-222	ENST00000604740	CAPN15	O75808	1086 aa		15.96	■□□□□ 0.15
LAMA4-222	ENST00000604740	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	15.87	■□□□□ 0.13
LAMA4-222	ENST00000604740	HNRNPUL2	Q1KMD3	747 aa	Known RBP	15.87	■□□□□ 0.13
LAMA4-222	ENST00000604740	APLP2	Q06481	763 aa		15.84	■□□□□ 0.13
LAMA4-222	ENST00000604740	SAMD1	Q6SPF0	538 aa	Predicted RBP	15.79	■□□□□ 0.12
LAMA4-222	ENST00000604740	MYCN	P04198	464 aa	Predicted RBP	15.77	■□□□□ 0.12
LAMA4-222	ENST00000604740	DSG3	P32926	999 aa		15.77	■□□□□ 0.12
LAMA4-222	ENST00000604740	TRH	P20396	242 aa	Predicted RBP	15.75	■□□□□ 0.11
LAMA4-222	ENST00000604740	FOXD4L1	Q9NU39	408 aa		15.72	■□□□□ 0.11
LAMA4-222	ENST00000604740	ZNF219	Q9P2Y4	722 aa	Predicted RBP	15.71	■□□□□ 0.11
LAMA4-222	ENST00000604740	ABCB7	O75027	752 aa		15.61	■□□□□ 0.09
LAMA4-222	ENST00000604740	ZBTB22	O15209	634 aa		15.53	■□□□□ 0.08
LAMA4-222	ENST00000604740	ATF5	Q9Y2D1	282 aa	Predicted RBP	15.37	■□□□□ 0.05
LAMA4-222	ENST00000604740	POLA2	Q14181	598 aa		15.35	■□□□□ 0.05
LAMA4-222	ENST00000604740	ATXN8OS	P0DMR3	200 aa		15.18	■□□□□ 0.02
LAMA4-222	ENST00000604740	RBM42	Q9BTD8	480 aa	Known RBP	15.07	■□□□□ 0
LAMA4-222	ENST00000604740	ZBTB12	Q9Y330	459 aa	Predicted RBP	15.05	■□□□□ -0
LAMA4-222	ENST00000604740	CSRNP3	Q8WYN3	585 aa		15	□□□□□ -0.01
LAMA4-222	ENST00000604740	EHMT2	Q96KQ7	1210 aa		14.99	□□□□□ -0.01
LAMA4-222	ENST00000604740	OSCAR	Q8IYS5	282 aa		14.88	□□□□□ -0.03
LAMA4-222	ENST00000604740	POTEH	Q6S545	545 aa		14.8	□□□□□ -0.04
LAMA4-222	ENST00000604740	FBLN2	P98095	1184 aa		14.79	□□□□□ -0.04
LAMA4-222	ENST00000604740	AKT1S1	Q96B36	256 aa		14.74	□□□□□ -0.05
LAMA4-222	ENST00000604740	MKRN4P	Q13434	485 aa	Predicted RBP	14.67	□□□□□ -0.06
LAMA4-222	ENST00000604740	CHRDL2	Q6WN34	429 aa		14.65	□□□□□ -0.06
LAMA4-222	ENST00000604740	REM2	Q8IYK8	340 aa	Predicted RBP	14.61	□□□□□ -0.07
LAMA4-222	ENST00000604740	SPDYE2B	A6NHP3	402 aa		14.6	□□□□□ -0.07
LAMA4-222	ENST00000604740	SPDYE6	P0CI01	402 aa		14.6	□□□□□ -0.07
LAMA4-222	ENST00000604740	SPDYE2	Q495Y8	402 aa		14.6	□□□□□ -0.07
LAMA4-222	ENST00000604740	ZNF692	Q9BU19	519 aa	Predicted RBP	14.48	□□□□□ -0.09
LAMA4-222	ENST00000604740	PITPNM1	O00562	1244 aa		14.47	□□□□□ -0.09
LAMA4-222	ENST00000604740	SSUH2	Q9Y2M2	353 aa		14.41	□□□□□ -0.1
LAMA4-222	ENST00000604740	PIP4P2	Q8N4L2	257 aa		14.34	□□□□□ -0.11
LAMA4-222	ENST00000604740	CLEC11A	Q9Y240	323 aa		14.31	□□□□□ -0.12
LAMA4-222	ENST00000604740	SPDYE1	Q8NFV5	336 aa	Predicted RBP	14.3	□□□□□ -0.12
LAMA4-222	ENST00000604740	FXR2	P51116	673 aa	Known RBP eCLIP	14.27	□□□□□ -0.13
LAMA4-222	ENST00000604740	PABPN1	Q86U42	306 aa	Known RBP eCLIP	14.27	□□□□□ -0.13
LAMA4-222	ENST00000604740	SPDYE4	A6NLX3	237 aa		14.11	□□□□□ -0.15
LAMA4-222	ENST00000604740	PRKAR2A	P13861	404 aa	Known RBP	14.1	□□□□□ -0.15
LAMA4-222	ENST00000604740	PRR29	P0C7W0	189 aa		14.08	□□□□□ -0.16
LAMA4-222	ENST00000604740	HAX1	O00165	279 aa		14.05	□□□□□ -0.16
LAMA4-222	ENST00000604740	CHADL	Q6NUI6	762 aa		14	□□□□□ -0.17
LAMA4-222	ENST00000604740	SP7	Q8TDD2	431 aa	Predicted RBP	13.97	□□□□□ -0.17
LAMA4-222	ENST00000604740	STAG3	Q9UJ98	1225 aa		13.91	□□□□□ -0.18
LAMA4-222	ENST00000604740	EVX2	Q03828	476 aa		13.85	□□□□□ -0.19
LAMA4-222	ENST00000604740	C19orf67	A6NJJ6	358 aa		13.81	□□□□□ -0.2
LAMA4-222	ENST00000604740	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.79	□□□□□ -0.2
LAMA4-222	ENST00000604740	PROM2	Q8N271	834 aa		13.75	□□□□□ -0.21
LAMA4-222	ENST00000604740	CREBZF	Q9NS37	354 aa		13.75	□□□□□ -0.21
LAMA4-222	ENST00000604740	CD44	P16070	742 aa	Known RBP	13.67	□□□□□ -0.22
LAMA4-222	ENST00000604740	FKBP8	Q14318	412 aa		13.64	□□□□□ -0.23
LAMA4-222	ENST00000604740	GABBR2	O75899	941 aa		13.56	□□□□□ -0.24
LAMA4-222	ENST00000604740	NPM1	P06748	294 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
LAMA4-222	ENST00000604740	MNX1	P50219	401 aa	Predicted RBP	13.51	□□□□□ -0.25
LAMA4-222	ENST00000604740	ZRANB1	Q9UGI0	708 aa		13.51	□□□□□ -0.25
LAMA4-222	ENST00000604740	PAK3	O75914	559 aa	Predicted RBP	13.46	□□□□□ -0.25
LAMA4-222	ENST00000604740	MIER1	Q8N108	512 aa		13.45	□□□□□ -0.26
LAMA4-222	ENST00000604740	ZNF579	Q8NAF0	562 aa	Known RBP	13.45	□□□□□ -0.26
LAMA4-222	ENST00000604740	PLEKHG5	O94827	1062 aa		13.44	□□□□□ -0.26
LAMA4-222	ENST00000604740	CLCN6	P51797	869 aa		13.4	□□□□□ -0.26
LAMA4-222	ENST00000604740	PLCD3	Q8N3E9	789 aa		13.39	□□□□□ -0.27
LAMA4-222	ENST00000604740	PHF12	Q96QT6	1004 aa		13.35	□□□□□ -0.27
LAMA4-222	ENST00000604740	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.31	□□□□□ -0.28
LAMA4-222	ENST00000604740	GALR2	O43603	387 aa	Predicted RBP	13.29	□□□□□ -0.28
LAMA4-222	ENST00000604740	DCBLD2	Q96PD2	775 aa		13.28	□□□□□ -0.28
LAMA4-222	ENST00000604740	FBXO3	Q9UK99	471 aa		13.28	□□□□□ -0.28
LAMA4-222	ENST00000604740	POTEI	P0CG38	1075 aa		13.26	□□□□□ -0.29
LAMA4-222	ENST00000604740	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.25	□□□□□ -0.29
LAMA4-222	ENST00000604740	RASEF	Q8IZ41	740 aa		13.22	□□□□□ -0.29

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