RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 FAM177BA6PVY3 158 aa11.42□□□□□ -0.58
TRIM28-214ENST00000600840 SRGNP10124 158 aa11.42□□□□□ -0.58
TRIM28-214ENST00000600840 PDE6BP35913 854 aa11.42□□□□□ -0.58
TRIM28-214ENST00000600840 MAP1SQ66K74 1059 aaPredicted RBP11.42□□□□□ -0.58
TRIM28-214ENST00000600840 TTLL7Q6ZT98 887 aa11.42□□□□□ -0.58
TRIM28-214ENST00000600840 CFAP44Q96MT7 982 aa11.42□□□□□ -0.58
TRIM28-214ENST00000600840 SPINK5Q9NQ38 1064 aaPredicted RBP11.42□□□□□ -0.58
TRIM28-214ENST00000600840 LTBP1Q14766 1721 aa11.41□□□□□ -0.58
TRIM28-214ENST00000600840 CHL1O00533 1208 aa11.41□□□□□ -0.58
TRIM28-214ENST00000600840 MAP2K1Q02750 393 aaPredicted RBP11.41□□□□□ -0.58
TRIM28-214ENST00000600840 FMR1Q06787 632 aaKnown RBP eCLIP11.41□□□□□ -0.582e-11■■■□□ 16.8
TRIM28-214ENST00000600840 GRM1Q13255 1194 aa11.41□□□□□ -0.58
TRIM28-214ENST00000600840 CLEC4GQ6UXB4 293 aa11.41□□□□□ -0.58
TRIM28-214ENST00000600840 NPM2Q86SE8 214 aaKnown RBP11.41□□□□□ -0.58
TRIM28-214ENST00000600840 WDR63Q8IWG1 891 aa11.41□□□□□ -0.58
TRIM28-214ENST00000600840 TRMT2AQ8IZ69 625 aaKnown RBP11.41□□□□□ -0.58
TRIM28-214ENST00000600840 L3MBTL3Q96JM7 780 aaPredicted RBP11.41□□□□□ -0.58
TRIM28-214ENST00000600840 ABT1Q9ULW3 272 aaKnown RBP11.41□□□□□ -0.58
TRIM28-214ENST00000600840 NIP7Q9Y221 180 aaKnown RBP eCLIP11.41□□□□□ -0.58
TRIM28-214ENST00000600840 IL16Q14005 1332 aa11.4□□□□□ -0.58
TRIM28-214ENST00000600840 LMOD3Q0VAK6 560 aa11.4□□□□□ -0.58
TRIM28-214ENST00000600840 PRPF40BQ6NWY9 871 aaKnown RBP11.4□□□□□ -0.58
TRIM28-214ENST00000600840 OLFM4Q6UX06 510 aa11.4□□□□□ -0.58
TRIM28-214ENST00000600840 NBPF5PQ86XG9 351 aaPredicted RBP11.4□□□□□ -0.58
TRIM28-214ENST00000600840 SALL2Q9Y467 1007 aaPredicted RBP11.4□□□□□ -0.58
TRIM28-214ENST00000600840 RNF123Q5XPI4 1314 aa11.39□□□□□ -0.59
TRIM28-214ENST00000600840 CENPBP07199 599 aaPredicted RBP11.39□□□□□ -0.59
TRIM28-214ENST00000600840 MYL6BP14649 208 aa11.39□□□□□ -0.59
TRIM28-214ENST00000600840 EPHX2P34913 555 aa11.39□□□□□ -0.59
TRIM28-214ENST00000600840 ST5P78524 1137 aa11.39□□□□□ -0.59
TRIM28-214ENST00000600840 STYK1Q6J9G0 422 aa11.39□□□□□ -0.59
TRIM28-214ENST00000600840 PAXIP1Q6ZW49 1069 aaPredicted RBP11.39□□□□□ -0.59
TRIM28-214ENST00000600840 LRP10Q7Z4F1 713 aa11.39□□□□□ -0.59
TRIM28-214ENST00000600840 SLC51AQ86UW1 340 aa11.39□□□□□ -0.59
TRIM28-214ENST00000600840 CNTROBQ8N137 903 aa11.39□□□□□ -0.59
TRIM28-214ENST00000600840 C7orf43Q8WVR3 580 aa11.39□□□□□ -0.59
TRIM28-214ENST00000600840 MASTLQ96GX5 879 aa11.39□□□□□ -0.59
TRIM28-214ENST00000600840 BABAM1Q9NWV8 329 aa11.39□□□□□ -0.59
TRIM28-214ENST00000600840 HACL1Q9UJ83 578 aa11.39□□□□□ -0.59
TRIM28-214ENST00000600840 CASP8AP2Q9UKL3 1982 aa11.39□□□□□ -0.59
TRIM28-214ENST00000600840 KLRG2A4D1S0 409 aaPredicted RBP11.38□□□□□ -0.59
TRIM28-214ENST00000600840 NPHP1O15259 732 aa11.38□□□□□ -0.59
TRIM28-214ENST00000600840 ANXA1P04083 346 aa11.38□□□□□ -0.59
TRIM28-214ENST00000600840 HNRNPUQ00839 825 aaKnown RBP eCLIP11.38□□□□□ -0.59
TRIM28-214ENST00000600840 PDIA6Q15084 440 aa11.38□□□□□ -0.59
TRIM28-214ENST00000600840 KRT24Q2M2I5 525 aa11.38□□□□□ -0.59
TRIM28-214ENST00000600840 PROSER3Q2NL68 480 aa11.38□□□□□ -0.59
TRIM28-214ENST00000600840 CYP4F22Q6NT55 531 aa11.38□□□□□ -0.59
TRIM28-214ENST00000600840 NUTM1Q86Y26 1132 aa11.38□□□□□ -0.59
TRIM28-214ENST00000600840 CAPNS2Q96L46 248 aa11.38□□□□□ -0.59
TRIM28-214ENST00000600840 PDZRN3Q9UPQ7 1066 aa11.38□□□□□ -0.59
TRIM28-214ENST00000600840 ABCC12Q96J65 1359 aa11.38□□□□□ -0.59
TRIM28-214ENST00000600840 MAP3K15Q6ZN16 1313 aa11.37□□□□□ -0.59
TRIM28-214ENST00000600840 UBN2Q6ZU65 1347 aa11.37□□□□□ -0.59
TRIM28-214ENST00000600840 GPTP24298 496 aa11.37□□□□□ -0.59
TRIM28-214ENST00000600840 SLFN5Q08AF3 891 aa11.37□□□□□ -0.59
TRIM28-214ENST00000600840 TPTE2Q6XPS3 522 aa11.37□□□□□ -0.59
TRIM28-214ENST00000600840 CNKSR1Q969H4 720 aa11.37□□□□□ -0.59
TRIM28-214ENST00000600840 CDCA7LQ96GN5 454 aa11.37□□□□□ -0.59
TRIM28-214ENST00000600840 MCOLN1Q9GZU1 580 aa11.37□□□□□ -0.59
TRIM28-214ENST00000600840 ZBTB3Q9H5J0 574 aa11.37□□□□□ -0.59
TRIM28-214ENST00000600840 ZNF277Q9NRM2 450 aaPredicted RBP11.37□□□□□ -0.59
TRIM28-214ENST00000600840 IFT57Q9NWB7 429 aa11.37□□□□□ -0.59
TRIM28-214ENST00000600840 TSPYL4Q9UJ04 414 aa11.37□□□□□ -0.59
TRIM28-214ENST00000600840 ZNF652Q9Y2D9 606 aa11.37□□□□□ -0.59
TRIM28-214ENST00000600840 TRPM7Q96QT4 1865 aa11.37□□□□□ -0.59
TRIM28-214ENST00000600840 ZBED9Q6R2W3 1325 aa11.36□□□□□ -0.59
TRIM28-214ENST00000600840 ERVV-1B6SEH8 477 aa11.36□□□□□ -0.59
TRIM28-214ENST00000600840 AOC2O75106 756 aa11.36□□□□□ -0.59
TRIM28-214ENST00000600840 EIF2S2P20042 333 aaKnown RBP11.36□□□□□ -0.59
TRIM28-214ENST00000600840 SUSD4Q5VX71 490 aa11.36□□□□□ -0.59
TRIM28-214ENST00000600840 NECTIN2Q92692 538 aa11.36□□□□□ -0.59
TRIM28-214ENST00000600840 DDX21Q9NR30 783 aaKnown RBP eCLIP11.36□□□□□ -0.59
TRIM28-214ENST00000600840 RGL2O15211 777 aa11.35□□□□□ -0.59
TRIM28-214ENST00000600840 NPR1P16066 1061 aa11.35□□□□□ -0.59
TRIM28-214ENST00000600840 GOLGA2Q08379 1002 aa11.35□□□□□ -0.59
TRIM28-214ENST00000600840 C3orf67Q6ZVT6 689 aa11.35□□□□□ -0.59
TRIM28-214ENST00000600840 ZNF34Q8IZ26 560 aa11.35□□□□□ -0.59
TRIM28-214ENST00000600840 GPR101Q96P66 508 aaPredicted RBP11.35□□□□□ -0.59
TRIM28-214ENST00000600840 BEGAINQ9BUH8 593 aa11.35□□□□□ -0.59
TRIM28-214ENST00000600840 MBIPQ9NS73 344 aa11.35□□□□□ -0.59
TRIM28-214ENST00000600840 COL4A5P29400 1685 aa11.34□□□□□ -0.59
TRIM28-214ENST00000600840 TRAF5O00463 557 aa11.34□□□□□ -0.59
TRIM28-214ENST00000600840 GNAI1P63096 354 aa11.34□□□□□ -0.59
TRIM28-214ENST00000600840 CALD1Q05682 793 aaKnown RBP11.34□□□□□ -0.59
TRIM28-214ENST00000600840 CCDC93Q567U6 631 aa11.34□□□□□ -0.59
TRIM28-214ENST00000600840 DUSP27Q5VZP5 1158 aa11.34□□□□□ -0.59
TRIM28-214ENST00000600840 SNED1Q8TER0 1413 aa11.34□□□□□ -0.59
TRIM28-214ENST00000600840 NTSR2O95665 410 aa11.33□□□□□ -0.6
TRIM28-214ENST00000600840 FKBP4Q02790 459 aaKnown RBP eCLIP11.33□□□□□ -0.6
TRIM28-214ENST00000600840 CRY2Q49AN0 593 aa11.33□□□□□ -0.6
TRIM28-214ENST00000600840 SOGA3Q5TF21 947 aa11.33□□□□□ -0.6
TRIM28-214ENST00000600840 GIGYF2Q6Y7W6 1299 aaKnown RBP11.33□□□□□ -0.6
TRIM28-214ENST00000600840 KIF6Q6ZMV9 814 aa11.33□□□□□ -0.6
TRIM28-214ENST00000600840 PNMA8AQ86V59 439 aaPredicted RBP11.33□□□□□ -0.6
TRIM28-214ENST00000600840 SYNE4Q8N205 404 aa11.33□□□□□ -0.6
TRIM28-214ENST00000600840 TSR2Q969E8 191 aaKnown RBP11.33□□□□□ -0.6
TRIM28-214ENST00000600840 ZNF428Q96B54 188 aa11.33□□□□□ -0.6
TRIM28-214ENST00000600840 E9PSI1 815 aa11.32□□□□□ -0.6
TRIM28-214ENST00000600840 GTF2E1P29083 439 aaPredicted RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms