RNA–Protein interactions for RNA: ENST00000600791.5

SHKBP1-226, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 494 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-226ENST00000600791 RPGRQ92834 1020 aaKnown RBP19.62■□□□□ 0.73
SHKBP1-226ENST00000600791 DDX21Q9NR30 783 aaKnown RBP eCLIP19.62■□□□□ 0.73
SHKBP1-226ENST00000600791 ZNF277Q9NRM2 450 aaPredicted RBP19.62■□□□□ 0.73
SHKBP1-226ENST00000600791 DDNO94850 711 aaPredicted RBP19.61■□□□□ 0.73
SHKBP1-226ENST00000600791 HOXA10P31260 410 aaPredicted RBP19.61■□□□□ 0.73
SHKBP1-226ENST00000600791 AIMP1Q12904 312 aaKnown RBP19.61■□□□□ 0.73
SHKBP1-226ENST00000600791 C3orf67Q6ZVT6 689 aa19.61■□□□□ 0.73
SHKBP1-226ENST00000600791 DNAJC5GQ8N7S2 189 aa19.61■□□□□ 0.73
SHKBP1-226ENST00000600791 CFAP44Q96MT7 982 aa19.61■□□□□ 0.73
SHKBP1-226ENST00000600791 CHPF2Q9P2E5 772 aa19.61■□□□□ 0.73
SHKBP1-226ENST00000600791 HOXB7P09629 217 aa19.6■□□□□ 0.73
SHKBP1-226ENST00000600791 HTRA3P83110 453 aa19.6■□□□□ 0.73
SHKBP1-226ENST00000600791 HDGFL1Q5TGJ6 251 aa19.6■□□□□ 0.73
SHKBP1-226ENST00000600791 UTP14AQ9BVJ6 771 aaKnown RBP19.6■□□□□ 0.73
SHKBP1-226ENST00000600791 APAF1O14727 1248 aa19.59■□□□□ 0.73
SHKBP1-226ENST00000600791 HSP90AB3PQ58FF7 597 aa19.59■□□□□ 0.73
SHKBP1-226ENST00000600791 RNF123Q5XPI4 1314 aa19.58■□□□□ 0.73
SHKBP1-226ENST00000600791 LAMB2P55268 1798 aa19.58■□□□□ 0.73
SHKBP1-226ENST00000600791 IARSP41252 1262 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-226ENST00000600791 RBM17Q96I25 401 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-226ENST00000600791 CRAMP1Q96RY5 1269 aa19.58■□□□□ 0.72
SHKBP1-226ENST00000600791 PSMD1Q99460 953 aa19.58■□□□□ 0.72
SHKBP1-226ENST00000600791 MBIPQ9NS73 344 aa19.58■□□□□ 0.72
SHKBP1-226ENST00000600791 ZNF541Q9H0D2 1346 aa19.57■□□□□ 0.72
SHKBP1-226ENST00000600791 SLC10A5Q5PT55 438 aa19.57■□□□□ 0.72
SHKBP1-226ENST00000600791 SLC51AQ86UW1 340 aa19.57■□□□□ 0.72
SHKBP1-226ENST00000600791 NLRP10Q86W26 655 aa19.57■□□□□ 0.72
SHKBP1-226ENST00000600791 SYNE4Q8N205 404 aa19.57■□□□□ 0.72
SHKBP1-226ENST00000600791 NLRP3Q96P20 1036 aa19.57■□□□□ 0.72
SHKBP1-226ENST00000600791 SCN4AP35499 1836 aa19.56■□□□□ 0.72
SHKBP1-226ENST00000600791 PPEF1O14829 653 aaPredicted RBP19.56■□□□□ 0.72
SHKBP1-226ENST00000600791 ZNF853P0CG23 659 aa19.56■□□□□ 0.72
SHKBP1-226ENST00000600791 TCIRG1Q13488 830 aa19.56■□□□□ 0.72
SHKBP1-226ENST00000600791 DUSP27Q5VZP5 1158 aa19.56■□□□□ 0.72
SHKBP1-226ENST00000600791 CC2D2BQ6DHV5 1058 aa19.56■□□□□ 0.72
SHKBP1-226ENST00000600791 L3MBTL3Q96JM7 780 aaPredicted RBP19.56■□□□□ 0.72
SHKBP1-226ENST00000600791 DBF4Q9UBU7 674 aaPredicted RBP19.56■□□□□ 0.72
SHKBP1-226ENST00000600791 COL4A5P29400 1685 aa19.56■□□□□ 0.72
SHKBP1-226ENST00000600791 PCNTO95613 3336 aa19.55■□□□□ 0.72
SHKBP1-226ENST00000600791 IFT57Q9NWB7 429 aa19.55■□□□□ 0.72
SHKBP1-226ENST00000600791 PLBD2Q8NHP8 589 aa19.54■□□□□ 0.72
SHKBP1-226ENST00000600791 KLRG1Q96E93 195 aa19.54■□□□□ 0.72
SHKBP1-226ENST00000600791 ABCC4O15439 1325 aa19.53■□□□□ 0.72
SHKBP1-226ENST00000600791 IQCA1LA6NCM1 817 aa19.53■□□□□ 0.72
SHKBP1-226ENST00000600791 FZD9O00144 591 aa19.53■□□□□ 0.72
SHKBP1-226ENST00000600791 TCERG1O14776 1098 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-226ENST00000600791 POTEIP0CG38 1075 aa19.53■□□□□ 0.72
SHKBP1-226ENST00000600791 POTEJP0CG39 1038 aa19.53■□□□□ 0.72
SHKBP1-226ENST00000600791 HCLS1P14317 486 aaPredicted RBP19.53■□□□□ 0.72
SHKBP1-226ENST00000600791 CALD1Q05682 793 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-226ENST00000600791 CCDC184Q52MB2 194 aa19.53■□□□□ 0.72
SHKBP1-226ENST00000600791 TRMT112Q9UI30 125 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-226ENST00000600791 SH3TC1Q8TE82 1336 aa19.52■□□□□ 0.72
SHKBP1-226ENST00000600791 DDX60Q8IY21 1712 aaKnown RBP19.52■□□□□ 0.72
SHKBP1-226ENST00000600791 GNAI1P63096 354 aa19.52■□□□□ 0.72
SHKBP1-226ENST00000600791 GRIPAP1Q4V328 841 aa19.52■□□□□ 0.72
SHKBP1-226ENST00000600791 ANKRD13DQ6ZTN6 518 aa19.52■□□□□ 0.72
SHKBP1-226ENST00000600791 HYPKQ9NX55 129 aa19.52■□□□□ 0.72
SHKBP1-226ENST00000600791 ZEB1P37275 1124 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-226ENST00000600791 CHADLQ6NUI6 762 aa19.51■□□□□ 0.71
SHKBP1-226ENST00000600791 JDP2Q8WYK2 163 aa19.51■□□□□ 0.71
SHKBP1-226ENST00000600791 ZNF428Q96B54 188 aa19.51■□□□□ 0.71
SHKBP1-226ENST00000600791 TAF1DQ9H5J8 278 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-226ENST00000600791 ISCA1Q9BUE6 129 aa19.5■□□□□ 0.71
SHKBP1-226ENST00000600791 ATP6V0A2Q9Y487 856 aa19.5■□□□□ 0.71
SHKBP1-226ENST00000600791 GPC2Q8N158 579 aa19.49■□□□□ 0.71
SHKBP1-226ENST00000600791 ADAMTSL1Q8N6G6 1762 aa19.49■□□□□ 0.71
SHKBP1-226ENST00000600791 TAF1P21675 1872 aa19.48■□□□□ 0.71
SHKBP1-226ENST00000600791 ATP5J2-PTCD1G3V325 749 aa19.48■□□□□ 0.71
SHKBP1-226ENST00000600791 ELL2O00472 640 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-226ENST00000600791 LDHDQ86WU2 507 aa19.48■□□□□ 0.71
SHKBP1-226ENST00000600791 LARGE2Q8N3Y3 721 aa19.48■□□□□ 0.71
SHKBP1-226ENST00000600791 JMYQ8N9B5 988 aa19.48■□□□□ 0.71
SHKBP1-226ENST00000600791 HACL1Q9UJ83 578 aa19.48■□□□□ 0.71
SHKBP1-226ENST00000600791 C8orf58Q8NAV2 365 aa19.47■□□□□ 0.71
SHKBP1-226ENST00000600791 TMX4Q9H1E5 349 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-226ENST00000600791 LRRC37AA6NMS7 1700 aa19.46■□□□□ 0.71
SHKBP1-226ENST00000600791 LTBP1Q14766 1721 aa19.46■□□□□ 0.71
SHKBP1-226ENST00000600791 PPIP5K2O43314 1243 aa19.46■□□□□ 0.71
SHKBP1-226ENST00000600791 BBOX1O75936 387 aa19.46■□□□□ 0.71
SHKBP1-226ENST00000600791 EPHX2P34913 555 aa19.46■□□□□ 0.71
SHKBP1-226ENST00000600791 EIF6P56537 245 aaKnown RBP19.46■□□□□ 0.71
SHKBP1-226ENST00000600791 GRAPQ13588 217 aa19.46■□□□□ 0.71
SHKBP1-226ENST00000600791 DDX46Q7L014 1031 aaKnown RBP19.46■□□□□ 0.71
SHKBP1-226ENST00000600791 GRAPLQ8TC17 118 aaPredicted RBP19.46■□□□□ 0.71
SHKBP1-226ENST00000600791 FAM89AQ96GI7 184 aa19.46■□□□□ 0.71
SHKBP1-226ENST00000600791 PHAXQ9H814 394 aaKnown RBP19.46■□□□□ 0.71
SHKBP1-226ENST00000600791 GOLGA2Q08379 1002 aa19.45■□□□□ 0.7
SHKBP1-226ENST00000600791 AOC3Q16853 763 aa19.45■□□□□ 0.7
SHKBP1-226ENST00000600791 EAPPQ56P03 285 aaPredicted RBP19.45■□□□□ 0.7
SHKBP1-226ENST00000600791 SP8Q8IXZ3 490 aa19.45■□□□□ 0.7
SHKBP1-226ENST00000600791 RTFDC1Q9BY42 306 aaPredicted RBP19.45■□□□□ 0.7
SHKBP1-226ENST00000600791 GJA3Q9Y6H8 435 aa19.45■□□□□ 0.7
SHKBP1-226ENST00000600791 COL4A1P02462 1669 aa19.44■□□□□ 0.7
SHKBP1-226ENST00000600791 TRIM28Q13263 835 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-226ENST00000600791 RIC3Q7Z5B4 369 aa19.44■□□□□ 0.7
SHKBP1-226ENST00000600791 NIM1KQ8IY84 436 aa19.44■□□□□ 0.7
SHKBP1-226ENST00000600791 PASKQ96RG2 1323 aa19.44■□□□□ 0.7
SHKBP1-226ENST00000600791 DUOX1Q9NRD9 1551 aa19.44■□□□□ 0.7
SHKBP1-226ENST00000600791 CCDC27Q2M243 656 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms