RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ABCC12Q96J65 1359 aa8.17□□□□□ -1.1
VRK3-220ENST00000600259 COL4A5P29400 1685 aa8.17□□□□□ -1.1
VRK3-220ENST00000600259 BCORQ6W2J9 1755 aa8.17□□□□□ -1.1
VRK3-220ENST00000600259 HSPA8P11142 646 aaKnown RBP8.16□□□□□ -1.1
VRK3-220ENST00000600259 SCN4AP35499 1836 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 EPS15P42566 896 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 SCNN1DP51172 638 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 SUSD4Q5VX71 490 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 CST9Q5W186 159 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 CC2D2BQ6DHV5 1058 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 MAP3K15Q6ZN16 1313 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 UBN2Q6ZU65 1347 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 C3orf67Q6ZVT6 689 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 LRP10Q7Z4F1 713 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 ZNF34Q8IZ26 560 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 CRAMP1Q96RY5 1269 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 PLEKHF1Q96S99 279 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 CLEC11AQ9Y240 323 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 ARFGEF2Q9Y6D5 1785 aa8.16□□□□□ -1.1
VRK3-220ENST00000600259 CACNA1SQ13698 1873 aa8.15□□□□□ -1.1
VRK3-220ENST00000600259 WDR33Q9C0J8 1336 aaKnown RBP8.15□□□□□ -1.1
VRK3-220ENST00000600259 SLC10A5Q5PT55 438 aa8.15□□□□□ -1.1
VRK3-220ENST00000600259 NGEFQ8N5V2 710 aa8.15□□□□□ -1.1
VRK3-220ENST00000600259 NYXQ9GZU5 481 aa8.15□□□□□ -1.1
VRK3-220ENST00000600259 DDX21Q9NR30 783 aaKnown RBP eCLIP8.15□□□□□ -1.1
VRK3-220ENST00000600259 RIC1Q4ADV7 1423 aa8.14□□□□□ -1.11
VRK3-220ENST00000600259 NTSR2O95665 410 aa8.14□□□□□ -1.11
VRK3-220ENST00000600259 PDIA6Q15084 440 aa8.14□□□□□ -1.11
VRK3-220ENST00000600259 GIGYF2Q6Y7W6 1299 aaKnown RBP8.14□□□□□ -1.11
VRK3-220ENST00000600259 JDP2Q8WYK2 163 aa8.14□□□□□ -1.11
VRK3-220ENST00000600259 PGAP2Q9UHJ9 254 aa8.14□□□□□ -1.11
VRK3-220ENST00000600259 RRP7AQ9Y3A4 280 aaKnown RBP8.14□□□□□ -1.11
VRK3-220ENST00000600259 IBTKQ9P2D0 1353 aaPredicted RBP8.13□□□□□ -1.11
VRK3-220ENST00000600259 LTBP1Q14766 1721 aa8.13□□□□□ -1.11
VRK3-220ENST00000600259 TRAF5O00463 557 aa8.13□□□□□ -1.11
VRK3-220ENST00000600259 GPTP24298 496 aa8.13□□□□□ -1.11
VRK3-220ENST00000600259 GTF2E1P29083 439 aaPredicted RBP8.13□□□□□ -1.11
VRK3-220ENST00000600259 EIF6P56537 245 aaKnown RBP8.13□□□□□ -1.11
VRK3-220ENST00000600259 GRIPAP1Q4V328 841 aa8.13□□□□□ -1.11
VRK3-220ENST00000600259 PNISRQ8TF01 805 aaKnown RBP8.13□□□□□ -1.11
VRK3-220ENST00000600259 AIDAQ96BJ3 306 aa8.13□□□□□ -1.11
VRK3-220ENST00000600259 THUMPD2Q9BTF0 503 aaKnown RBP8.13□□□□□ -1.11
VRK3-220ENST00000600259 RTFDC1Q9BY42 306 aaPredicted RBP8.13□□□□□ -1.11
VRK3-220ENST00000600259 GJA3Q9Y6H8 435 aa8.13□□□□□ -1.11
VRK3-220ENST00000600259 MYL6BP14649 208 aa8.12□□□□□ -1.11
VRK3-220ENST00000600259 MAP2K1Q02750 393 aaPredicted RBP8.12□□□□□ -1.11
VRK3-220ENST00000600259 CXCL9Q07325 125 aa8.12□□□□□ -1.11
VRK3-220ENST00000600259 NFE2L2Q16236 605 aa8.12□□□□□ -1.11
VRK3-220ENST00000600259 USP50Q70EL3 339 aaPredicted RBP8.12□□□□□ -1.11
VRK3-220ENST00000600259 LARGE2Q8N3Y3 721 aa8.12□□□□□ -1.11
VRK3-220ENST00000600259 ABHD8Q96I13 439 aa8.12□□□□□ -1.11
VRK3-220ENST00000600259 RBM17Q96I25 401 aaKnown RBP8.12□□□□□ -1.11
VRK3-220ENST00000600259 CAPNS2Q96L46 248 aa8.12□□□□□ -1.11
VRK3-220ENST00000600259 VPS33BQ9H267 617 aa8.12□□□□□ -1.11
VRK3-220ENST00000600259 ZBTB3Q9H5J0 574 aa8.12□□□□□ -1.11
VRK3-220ENST00000600259 ATP6V0A2Q9Y487 856 aa8.12□□□□□ -1.11
VRK3-220ENST00000600259 ERBB4Q15303 1308 aa8.11□□□□□ -1.11
VRK3-220ENST00000600259 PPEF1O14829 653 aaPredicted RBP8.11□□□□□ -1.11
VRK3-220ENST00000600259 RGS19P49795 217 aa8.11□□□□□ -1.11
VRK3-220ENST00000600259 HIRAP54198 1017 aaPredicted RBP8.11□□□□□ -1.11
VRK3-220ENST00000600259 PROSER3Q2NL68 480 aa8.11□□□□□ -1.11
VRK3-220ENST00000600259 CYP4F22Q6NT55 531 aa8.11□□□□□ -1.11
VRK3-220ENST00000600259 RPGRQ92834 1020 aaKnown RBP8.11□□□□□ -1.11
VRK3-220ENST00000600259 GPR101Q96P66 508 aaPredicted RBP8.11□□□□□ -1.11
VRK3-220ENST00000600259 GPRC5DQ9NZD1 345 aa8.11□□□□□ -1.11
VRK3-220ENST00000600259 ABT1Q9ULW3 272 aaKnown RBP8.11□□□□□ -1.11
VRK3-220ENST00000600259 TLL2Q9Y6L7 1015 aa8.11□□□□□ -1.11
VRK3-220ENST00000600259 TCERG1O14776 1098 aaKnown RBP8.1□□□□□ -1.11
VRK3-220ENST00000600259 AOC2O75106 756 aa8.1□□□□□ -1.11
VRK3-220ENST00000600259 LMOD1P29536 600 aaPredicted RBP8.1□□□□□ -1.11
VRK3-220ENST00000600259 MAP2K2P36507 400 aa8.1□□□□□ -1.11
VRK3-220ENST00000600259 AOC3Q16853 763 aa8.1□□□□□ -1.11
VRK3-220ENST00000600259 PARP10Q53GL7 1025 aa8.1□□□□□ -1.11
VRK3-220ENST00000600259 KIF6Q6ZMV9 814 aa8.1□□□□□ -1.11
VRK3-220ENST00000600259 PPP1R42Q7Z4L9 355 aa8.1□□□□□ -1.11
VRK3-220ENST00000600259 SAPCD2Q86UD0 394 aa8.1□□□□□ -1.11
VRK3-220ENST00000600259 SP8Q8IXZ3 490 aa8.1□□□□□ -1.11
VRK3-220ENST00000600259 NLRP3Q96P20 1036 aa8.1□□□□□ -1.11
VRK3-220ENST00000600259 ADARB2Q9NS39 739 aaKnown RBP8.1□□□□□ -1.11
VRK3-220ENST00000600259 ZNRF3Q9ULT6 936 aa8.1□□□□□ -1.11
VRK3-220ENST00000600259 ABCC4O15439 1325 aa8.09□□□□□ -1.11
VRK3-220ENST00000600259 PPIP5K2O43314 1243 aa8.09□□□□□ -1.11
VRK3-220ENST00000600259 BBOX1O75936 387 aa8.09□□□□□ -1.11
VRK3-220ENST00000600259 ANXA1P04083 346 aa8.09□□□□□ -1.11
VRK3-220ENST00000600259 ECE1P42892 770 aa8.09□□□□□ -1.11
VRK3-220ENST00000600259 GMPSP49915 693 aaPredicted RBP8.09□□□□□ -1.11
VRK3-220ENST00000600259 NLRP10Q86W26 655 aa8.09□□□□□ -1.11
VRK3-220ENST00000600259 NIM1KQ8IY84 436 aa8.09□□□□□ -1.11
VRK3-220ENST00000600259 HHIPL1Q96JK4 782 aa8.09□□□□□ -1.11
VRK3-220ENST00000600259 UTP14AQ9BVJ6 771 aaKnown RBP8.09□□□□□ -1.11
VRK3-220ENST00000600259 GLIS2Q9BZE0 524 aaPredicted RBP8.09□□□□□ -1.11
VRK3-220ENST00000600259 NUP98P52948 1817 aa8.08□□□□□ -1.12
VRK3-220ENST00000600259 SHTN1A0MZ66 631 aa8.08□□□□□ -1.12
VRK3-220ENST00000600259 YDJCA8MPS7 323 aa8.08□□□□□ -1.12
VRK3-220ENST00000600259 SLC34A2O95436 690 aa8.08□□□□□ -1.12
VRK3-220ENST00000600259 HCLS1P14317 486 aaPredicted RBP8.08□□□□□ -1.12
VRK3-220ENST00000600259 KIAA2012Q0VF49 1180 aa8.08□□□□□ -1.12
VRK3-220ENST00000600259 TCIRG1Q13488 830 aa8.08□□□□□ -1.12
VRK3-220ENST00000600259 COPS6Q7L5N1 327 aa8.08□□□□□ -1.12
VRK3-220ENST00000600259 MPNDQ8N594 471 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms