RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	NYX	Q9GZU5	481 aa		27.86	■■■□□ 2.05
LTBP4-227	ENST00000600026	TNRC6C	Q9HCJ0	1690 aa	Known RBP	27.86	■■■□□ 2.05
LTBP4-227	ENST00000600026	PXDNL	A1KZ92	1463 aa		27.85	■■■□□ 2.05
LTBP4-227	ENST00000600026	NPHP1	O15259	732 aa		27.85	■■■□□ 2.05
LTBP4-227	ENST00000600026	TRIM28	Q13263	835 aa	Known RBP	27.85	■■■□□ 2.05
LTBP4-227	ENST00000600026	API5	Q9BZZ5	524 aa	Known RBP	27.85	■■■□□ 2.05
LTBP4-227	ENST00000600026	LAMB2	P55268	1798 aa		27.85	■■■□□ 2.05
LTBP4-227	ENST00000600026	DCAF8L1	A6NGE4	600 aa		27.84	■■■□□ 2.05
LTBP4-227	ENST00000600026	IGKV5-2	P06315	115 aa		27.84	■■■□□ 2.05
LTBP4-227	ENST00000600026	TPTE2	Q6XPS3	522 aa		27.84	■■■□□ 2.05
LTBP4-227	ENST00000600026	CCDC24	Q8N4L8	307 aa		27.84	■■■□□ 2.05
LTBP4-227	ENST00000600026	ZNF784	Q8NCA9	323 aa	Predicted RBP	27.84	■■■□□ 2.05
LTBP4-227	ENST00000600026	UTP14A	Q9BVJ6	771 aa	Known RBP	27.84	■■■□□ 2.05
LTBP4-227	ENST00000600026	ABCC12	Q96J65	1359 aa		27.84	■■■□□ 2.05
LTBP4-227	ENST00000600026	COL11A2	P13942	1736 aa	Predicted RBP	27.84	■■■□□ 2.05
LTBP4-227	ENST00000600026	DDX60	Q8IY21	1712 aa	Known RBP	27.84	■■■□□ 2.05
LTBP4-227	ENST00000600026	MS4A1	P11836	297 aa		27.83	■■■□□ 2.05
LTBP4-227	ENST00000600026	ST5	P78524	1137 aa		27.83	■■■□□ 2.05
LTBP4-227	ENST00000600026	CWF19L2	Q2TBE0	894 aa	Known RBP	27.83	■■■□□ 2.05
LTBP4-227	ENST00000600026	NUTM1	Q86Y26	1132 aa		27.83	■■■□□ 2.05
LTBP4-227	ENST00000600026	CD2AP	Q9Y5K6	639 aa		27.83	■■■□□ 2.05
LTBP4-227	ENST00000600026	RNF123	Q5XPI4	1314 aa		27.83	■■■□□ 2.05
LTBP4-227	ENST00000600026	DLEC1	Q9Y238	1755 aa		27.82	■■■□□ 2.04
LTBP4-227	ENST00000600026	PLIN1	O60240	522 aa		27.82	■■■□□ 2.04
LTBP4-227	ENST00000600026	ATF7IP	Q6VMQ6	1270 aa		27.82	■■■□□ 2.04
LTBP4-227	ENST00000600026	CCDC191	Q8NCU4	936 aa		27.82	■■■□□ 2.04
LTBP4-227	ENST00000600026	CWC25	Q9NXE8	425 aa	Predicted RBP	27.82	■■■□□ 2.04
LTBP4-227	ENST00000600026	NEURL1B	A8MQ27	555 aa		27.81	■■■□□ 2.04
LTBP4-227	ENST00000600026	SLC4A10	Q6U841	1118 aa		27.81	■■■□□ 2.04
LTBP4-227	ENST00000600026	LINS1	Q8NG48	757 aa		27.81	■■■□□ 2.04
LTBP4-227	ENST00000600026	TRMT112	Q9UI30	125 aa	Known RBP	27.81	■■■□□ 2.04
LTBP4-227	ENST00000600026	GTF2E1	P29083	439 aa	Predicted RBP	27.8	■■■□□ 2.04
LTBP4-227	ENST00000600026	ERFE	Q4G0M1	354 aa		27.8	■■■□□ 2.04
LTBP4-227	ENST00000600026	BEND3	Q5T5X7	828 aa		27.8	■■■□□ 2.04
LTBP4-227	ENST00000600026	RIC1	Q4ADV7	1423 aa		27.8	■■■□□ 2.04
LTBP4-227	ENST00000600026	SH3TC1	Q8TE82	1336 aa		27.78	■■■□□ 2.04
LTBP4-227	ENST00000600026	FTSJ3	Q8IY81	847 aa	Known RBP	27.78	■■■□□ 2.04
LTBP4-227	ENST00000600026	NLGN2	Q8NFZ4	835 aa		27.78	■■■□□ 2.04
LTBP4-227	ENST00000600026	SYT17	Q9BSW7	474 aa		27.78	■■■□□ 2.04
LTBP4-227	ENST00000600026	BRCA1	P38398	1863 aa	Known RBP	27.78	■■■□□ 2.04
LTBP4-227	ENST00000600026	TRIM27	P14373	513 aa		27.77	■■■□□ 2.04
LTBP4-227	ENST00000600026	DZIP1L	Q8IYY4	767 aa	Known RBP	27.77	■■■□□ 2.04
LTBP4-227	ENST00000600026	BRIP1	Q9BX63	1249 aa		27.77	■■■□□ 2.04
LTBP4-227	ENST00000600026	SRCIN1	Q9C0H9	1055 aa		27.76	■■■□□ 2.03
LTBP4-227	ENST00000600026	UTRN	P46939	3433 aa		27.76	■■■□□ 2.03
LTBP4-227	ENST00000600026	GCKR	Q14397	625 aa		27.75	■■■□□ 2.03
LTBP4-227	ENST00000600026	PDE3A	Q14432	1141 aa		27.75	■■■□□ 2.03
LTBP4-227	ENST00000600026	SYNE4	Q8N205	404 aa		27.75	■■■□□ 2.03
LTBP4-227	ENST00000600026	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	27.75	■■■□□ 2.03
LTBP4-227	ENST00000600026	FAM89A	Q96GI7	184 aa		27.75	■■■□□ 2.03
LTBP4-227	ENST00000600026	TNN	Q9UQP3	1299 aa		27.75	■■■□□ 2.03
LTBP4-227	ENST00000600026	ABCC4	O15439	1325 aa		27.74	■■■□□ 2.03
LTBP4-227	ENST00000600026	ALDH1L1	O75891	902 aa		27.74	■■■□□ 2.03
LTBP4-227	ENST00000600026	PCCA	P05165	728 aa	Predicted RBP	27.74	■■■□□ 2.03
LTBP4-227	ENST00000600026	TGFB2	P61812	414 aa		27.74	■■■□□ 2.03
LTBP4-227	ENST00000600026	RTL5	Q5HYW3	569 aa	Predicted RBP	27.74	■■■□□ 2.03
LTBP4-227	ENST00000600026	CLUAP1	Q96AJ1	413 aa		27.74	■■■□□ 2.03
LTBP4-227	ENST00000600026	MYH3	P11055	1940 aa		27.74	■■■□□ 2.03
LTBP4-227	ENST00000600026	CACNA1S	Q13698	1873 aa		27.73	■■■□□ 2.03
LTBP4-227	ENST00000600026	PDE6B	P35913	854 aa		27.73	■■■□□ 2.03
LTBP4-227	ENST00000600026	CHRNA5	P30532	468 aa		27.72	■■■□□ 2.03
LTBP4-227	ENST00000600026	SLC10A5	Q5PT55	438 aa		27.72	■■■□□ 2.03
LTBP4-227	ENST00000600026	JARID2	Q92833	1246 aa	Predicted RBP	27.72	■■■□□ 2.03
LTBP4-227	ENST00000600026	NEFL	P07196	543 aa		27.71	■■■□□ 2.03
LTBP4-227	ENST00000600026	HCLS1	P14317	486 aa	Predicted RBP	27.71	■■■□□ 2.03
LTBP4-227	ENST00000600026	DPEP1	P16444	411 aa		27.71	■■■□□ 2.03
LTBP4-227	ENST00000600026	C2CD5	Q86YS7	1000 aa		27.71	■■■□□ 2.03
LTBP4-227	ENST00000600026	CDHR2	Q9BYE9	1310 aa		27.7	■■■□□ 2.03
LTBP4-227	ENST00000600026		A0A0G2JLW4	131 aa		27.7	■■■□□ 2.02
LTBP4-227	ENST00000600026	CCT4	P50991	539 aa	Known RBP	27.7	■■■□□ 2.02
LTBP4-227	ENST00000600026		H7C1W4	665 aa		27.69	■■■□□ 2.02
LTBP4-227	ENST00000600026	IRS4	O14654	1257 aa	Predicted RBP	27.69	■■■□□ 2.02
LTBP4-227	ENST00000600026	C3orf67	Q6ZVT6	689 aa		27.69	■■■□□ 2.02
LTBP4-227	ENST00000600026	UBE3B	Q7Z3V4	1068 aa		27.69	■■■□□ 2.02
LTBP4-227	ENST00000600026	PANK1	Q8TE04	598 aa		27.69	■■■□□ 2.02
LTBP4-227	ENST00000600026	PDZRN3	Q9UPQ7	1066 aa		27.69	■■■□□ 2.02
LTBP4-227	ENST00000600026	KLRG2	A4D1S0	409 aa	Predicted RBP	27.68	■■■□□ 2.02
LTBP4-227	ENST00000600026		H0YIN7	160 aa		27.67	■■■□□ 2.02
LTBP4-227	ENST00000600026	GRM8	O00222	908 aa		27.67	■■■□□ 2.02
LTBP4-227	ENST00000600026	CASP7	P55210	303 aa		27.67	■■■□□ 2.02
LTBP4-227	ENST00000600026	C20orf194	Q5TEA3	1177 aa		27.67	■■■□□ 2.02
LTBP4-227	ENST00000600026	NLRP3	Q96P20	1036 aa		27.67	■■■□□ 2.02
LTBP4-227	ENST00000600026	RLBP1	P12271	317 aa		27.66	■■■□□ 2.02
LTBP4-227	ENST00000600026	KCNA3	P22001	575 aa		27.66	■■■□□ 2.02
LTBP4-227	ENST00000600026	INTS3	Q68E01	1043 aa	Known RBP	27.66	■■■□□ 2.02
LTBP4-227	ENST00000600026	TMEM57	Q8N5G2	664 aa		27.66	■■■□□ 2.02
LTBP4-227	ENST00000600026	SRGN	P10124	158 aa		27.65	■■■□□ 2.02
LTBP4-227	ENST00000600026	CRY2	Q49AN0	593 aa		27.65	■■■□□ 2.02
LTBP4-227	ENST00000600026	C9orf78	Q9NZ63	289 aa	Predicted RBP	27.65	■■■□□ 2.02
LTBP4-227	ENST00000600026	ITPRIP	Q8IWB1	547 aa		27.64	■■■□□ 2.02
LTBP4-227	ENST00000600026	ARFGEF1	Q9Y6D6	1849 aa		27.64	■■■□□ 2.01
LTBP4-227	ENST00000600026	PDE8A	O60658	829 aa		27.63	■■■□□ 2.01
LTBP4-227	ENST00000600026	HSP90B1	P14625	803 aa	Known RBP	27.63	■■■□□ 2.01
LTBP4-227	ENST00000600026	MASTL	Q96GX5	879 aa		27.63	■■■□□ 2.01
LTBP4-227	ENST00000600026	WWC3	Q9ULE0	1092 aa		27.63	■■■□□ 2.01
LTBP4-227	ENST00000600026	COG6	Q9Y2V7	657 aa		27.63	■■■□□ 2.01
LTBP4-227	ENST00000600026	UTY	O14607	1347 aa		27.63	■■■□□ 2.01
LTBP4-227	ENST00000600026	TAF1	P21675	1872 aa		27.62	■■■□□ 2.01
LTBP4-227	ENST00000600026	NPR1	P16066	1061 aa		27.62	■■■□□ 2.01
LTBP4-227	ENST00000600026	C1QTNF8	P60827	252 aa		27.62	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms