RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 HSP90AB3PQ58FF7 597 aa12.78□□□□□ -0.36
VRK3-216ENST00000599342 CC2D2BQ6DHV5 1058 aa12.78□□□□□ -0.36
VRK3-216ENST00000599342 LRP10Q7Z4F1 713 aa12.78□□□□□ -0.36
VRK3-216ENST00000599342 DNAJC5GQ8N7S2 189 aa12.78□□□□□ -0.36
VRK3-216ENST00000599342 UTP14AQ9BVJ6 771 aaKnown RBP12.78□□□□□ -0.36
VRK3-216ENST00000599342 TRIM35Q9UPQ4 493 aa12.78□□□□□ -0.36
VRK3-216ENST00000599342 IARSP41252 1262 aaKnown RBP12.77□□□□□ -0.37
VRK3-216ENST00000599342 COPS6Q7L5N1 327 aa12.77□□□□□ -0.37
VRK3-216ENST00000599342 XAGE3Q8WTP9 111 aa12.77□□□□□ -0.37
VRK3-216ENST00000599342 KLRG1Q96E93 195 aa12.77□□□□□ -0.37
VRK3-216ENST00000599342 NLRP3Q96P20 1036 aa12.77□□□□□ -0.37
VRK3-216ENST00000599342 TMX4Q9H1E5 349 aaPredicted RBP12.77□□□□□ -0.37
VRK3-216ENST00000599342 DDX21Q9NR30 783 aaKnown RBP eCLIP12.77□□□□□ -0.37
VRK3-216ENST00000599342 PPEF1O14829 653 aaPredicted RBP12.76□□□□□ -0.37
VRK3-216ENST00000599342 HOXB7P09629 217 aa12.76□□□□□ -0.37
VRK3-216ENST00000599342 HOXA10P31260 410 aaPredicted RBP12.76□□□□□ -0.37
VRK3-216ENST00000599342 KRT24Q2M2I5 525 aa12.76□□□□□ -0.37
VRK3-216ENST00000599342 GRIPAP1Q4V328 841 aa12.76□□□□□ -0.37
VRK3-216ENST00000599342 HDGFL1Q5TGJ6 251 aa12.76□□□□□ -0.37
VRK3-216ENST00000599342 SYNE4Q8N205 404 aa12.76□□□□□ -0.37
VRK3-216ENST00000599342 CRAMP1Q96RY5 1269 aa12.76□□□□□ -0.37
VRK3-216ENST00000599342 PSMD1Q99460 953 aa12.76□□□□□ -0.37
VRK3-216ENST00000599342 RNF123Q5XPI4 1314 aa12.76□□□□□ -0.37
VRK3-216ENST00000599342 JDP2Q8WYK2 163 aa12.75□□□□□ -0.37
VRK3-216ENST00000599342 L3MBTL3Q96JM7 780 aaPredicted RBP12.75□□□□□ -0.37
VRK3-216ENST00000599342 CFAP44Q96MT7 982 aa12.75□□□□□ -0.37
VRK3-216ENST00000599342 ZNF541Q9H0D2 1346 aa12.75□□□□□ -0.37
VRK3-216ENST00000599342 CHPF2Q9P2E5 772 aa12.75□□□□□ -0.37
VRK3-216ENST00000599342 TCERG1O14776 1098 aaKnown RBP12.74□□□□□ -0.37
VRK3-216ENST00000599342 CALD1Q05682 793 aaKnown RBP12.74□□□□□ -0.37
VRK3-216ENST00000599342 TCIRG1Q13488 830 aa12.74□□□□□ -0.37
VRK3-216ENST00000599342 CHADLQ6NUI6 762 aa12.74□□□□□ -0.37
VRK3-216ENST00000599342 DBF4Q9UBU7 674 aaPredicted RBP12.74□□□□□ -0.37
VRK3-216ENST00000599342 ANKRD36CQ5JPF3 1778 aa12.74□□□□□ -0.37
VRK3-216ENST00000599342 SNED1Q8TER0 1413 aa12.73□□□□□ -0.37
VRK3-216ENST00000599342 SH3TC1Q8TE82 1336 aa12.73□□□□□ -0.37
VRK3-216ENST00000599342 FZD9O00144 591 aa12.73□□□□□ -0.37
VRK3-216ENST00000599342 APAF1O14727 1248 aa12.73□□□□□ -0.37
VRK3-216ENST00000599342 EIF6P56537 245 aaKnown RBP12.73□□□□□ -0.37
VRK3-216ENST00000599342 SLC10A5Q5PT55 438 aa12.73□□□□□ -0.37
VRK3-216ENST00000599342 C3orf67Q6ZVT6 689 aa12.73□□□□□ -0.37
VRK3-216ENST00000599342 NLRP10Q86W26 655 aa12.73□□□□□ -0.37
VRK3-216ENST00000599342 LDHDQ86WU2 507 aa12.73□□□□□ -0.37
VRK3-216ENST00000599342 TAF1DQ9H5J8 278 aaPredicted RBP12.73□□□□□ -0.37
VRK3-216ENST00000599342 MBIPQ9NS73 344 aa12.73□□□□□ -0.37
VRK3-216ENST00000599342 TRMT112Q9UI30 125 aaKnown RBP12.73□□□□□ -0.37
VRK3-216ENST00000599342 HACL1Q9UJ83 578 aa12.73□□□□□ -0.37
VRK3-216ENST00000599342 SCN4AP35499 1836 aa12.72□□□□□ -0.37
VRK3-216ENST00000599342 POTEIP0CG38 1075 aa12.72□□□□□ -0.37
VRK3-216ENST00000599342 POTEJP0CG39 1038 aa12.72□□□□□ -0.37
VRK3-216ENST00000599342 EAPPQ56P03 285 aaPredicted RBP12.72□□□□□ -0.37
VRK3-216ENST00000599342 DUSP27Q5VZP5 1158 aa12.72□□□□□ -0.37
VRK3-216ENST00000599342 GPC2Q8N158 579 aa12.72□□□□□ -0.37
VRK3-216ENST00000599342 LARGE2Q8N3Y3 721 aa12.72□□□□□ -0.37
VRK3-216ENST00000599342 JMYQ8N9B5 988 aa12.72□□□□□ -0.37
VRK3-216ENST00000599342 PLBD2Q8NHP8 589 aa12.72□□□□□ -0.37
VRK3-216ENST00000599342 ABCC4O15439 1325 aa12.71□□□□□ -0.37
VRK3-216ENST00000599342 HCLS1P14317 486 aaPredicted RBP12.71□□□□□ -0.37
VRK3-216ENST00000599342 EPHX2P34913 555 aa12.71□□□□□ -0.37
VRK3-216ENST00000599342 GNAI1P63096 354 aa12.71□□□□□ -0.37
VRK3-216ENST00000599342 IFFO2Q5TF58 517 aa12.71□□□□□ -0.37
VRK3-216ENST00000599342 ANKRD13DQ6ZTN6 518 aa12.71□□□□□ -0.37
VRK3-216ENST00000599342 IFT57Q9NWB7 429 aa12.71□□□□□ -0.37
VRK3-216ENST00000599342 HYPKQ9NX55 129 aa12.71□□□□□ -0.37
VRK3-216ENST00000599342 ATP6V0A2Q9Y487 856 aa12.71□□□□□ -0.37
VRK3-216ENST00000599342 PPIP5K2O43314 1243 aa12.7□□□□□ -0.38
VRK3-216ENST00000599342 LMOD1P29536 600 aaPredicted RBP12.7□□□□□ -0.38
VRK3-216ENST00000599342 DDX46Q7L014 1031 aaKnown RBP12.7□□□□□ -0.38
VRK3-216ENST00000599342 PNMA8AQ86V59 439 aaPredicted RBP12.7□□□□□ -0.38
VRK3-216ENST00000599342 NIM1KQ8IY84 436 aa12.7□□□□□ -0.38
VRK3-216ENST00000599342 SUPT20HQ8NEM7 779 aa12.7□□□□□ -0.38
VRK3-216ENST00000599342 CLEC11AQ9Y240 323 aa12.7□□□□□ -0.38
VRK3-216ENST00000599342 GJA3Q9Y6H8 435 aa12.7□□□□□ -0.38
VRK3-216ENST00000599342 BBOX1O75936 387 aa12.69□□□□□ -0.38
VRK3-216ENST00000599342 ZNF853P0CG23 659 aa12.69□□□□□ -0.38
VRK3-216ENST00000599342 GOLGA2Q08379 1002 aa12.69□□□□□ -0.38
VRK3-216ENST00000599342 GRAPQ13588 217 aa12.69□□□□□ -0.38
VRK3-216ENST00000599342 GRAPLQ8TC17 118 aaPredicted RBP12.69□□□□□ -0.38
VRK3-216ENST00000599342 ZNF428Q96B54 188 aa12.69□□□□□ -0.38
VRK3-216ENST00000599342 VPS33BQ9H267 617 aa12.69□□□□□ -0.38
VRK3-216ENST00000599342 CREBZFQ9NS37 354 aa12.69□□□□□ -0.38
VRK3-216ENST00000599342 ATP5J2-PTCD1G3V325 749 aa12.68□□□□□ -0.38
VRK3-216ENST00000599342 ZEB1P37275 1124 aaPredicted RBP12.68□□□□□ -0.38
VRK3-216ENST00000599342 AOC3Q16853 763 aa12.68□□□□□ -0.38
VRK3-216ENST00000599342 DPP8Q6V1X1 898 aaPredicted RBP12.68□□□□□ -0.38
VRK3-216ENST00000599342 RIC3Q7Z5B4 369 aa12.68□□□□□ -0.38
VRK3-216ENST00000599342 SLC51AQ86UW1 340 aa12.68□□□□□ -0.38
VRK3-216ENST00000599342 SP8Q8IXZ3 490 aa12.68□□□□□ -0.38
VRK3-216ENST00000599342 CHMP4AQ9BY43 222 aa12.68□□□□□ -0.38
VRK3-216ENST00000599342 LAMB2P55268 1798 aa12.68□□□□□ -0.38
VRK3-216ENST00000599342 COL4A5P29400 1685 aa12.67□□□□□ -0.38
VRK3-216ENST00000599342 ELL2O00472 640 aaPredicted RBP12.67□□□□□ -0.38
VRK3-216ENST00000599342 TMC4Q7Z404 712 aa12.67□□□□□ -0.38
VRK3-216ENST00000599342 MPNDQ8N594 471 aa12.67□□□□□ -0.38
VRK3-216ENST00000599342 FAM89AQ96GI7 184 aa12.67□□□□□ -0.38
VRK3-216ENST00000599342 ISCA1Q9BUE6 129 aa12.67□□□□□ -0.38
VRK3-216ENST00000599342 PASKQ96RG2 1323 aa12.66□□□□□ -0.38
VRK3-216ENST00000599342 RTFDC1Q9BY42 306 aaPredicted RBP12.66□□□□□ -0.38
VRK3-216ENST00000599342 HSP90B1P14625 803 aaKnown RBP12.65□□□□□ -0.38
VRK3-216ENST00000599342 SCNN1DP51172 638 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms