RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 ADCY9O60503 1353 aa14.34□□□□□ -0.11
VRK3-210ENST00000596121 PI4KAP2A4QPH2 592 aa14.34□□□□□ -0.11
VRK3-210ENST00000596121 E9PSI1 815 aa14.34□□□□□ -0.11
VRK3-210ENST00000596121 GTF2E1P29083 439 aaPredicted RBP14.34□□□□□ -0.11
VRK3-210ENST00000596121 STYK1Q6J9G0 422 aa14.34□□□□□ -0.11
VRK3-210ENST00000596121 ARHGAP27Q6ZUM4 889 aa14.34□□□□□ -0.11
VRK3-210ENST00000596121 PI4KAP1Q8N8J0 262 aa14.34□□□□□ -0.11
VRK3-210ENST00000596121 MYD88Q99836 296 aa14.34□□□□□ -0.11
VRK3-210ENST00000596121 STK31Q9BXU1 1019 aa14.34□□□□□ -0.11
VRK3-210ENST00000596121 MAP3K2Q9Y2U5 619 aa14.34□□□□□ -0.11
VRK3-210ENST00000596121 ANKRD36CQ5JPF3 1778 aa14.33□□□□□ -0.12
VRK3-210ENST00000596121 HCLS1P14317 486 aaPredicted RBP14.33□□□□□ -0.12
VRK3-210ENST00000596121 PRELPP51888 382 aa14.33□□□□□ -0.12
VRK3-210ENST00000596121 TRIM28Q13263 835 aaKnown RBP14.33□□□□□ -0.12
VRK3-210ENST00000596121 CRY2Q49AN0 593 aa14.33□□□□□ -0.12
VRK3-210ENST00000596121 KSR2Q6VAB6 950 aa14.33□□□□□ -0.12
VRK3-210ENST00000596121 PPP1R42Q7Z4L9 355 aa14.33□□□□□ -0.12
VRK3-210ENST00000596121 SLC51AQ86UW1 340 aa14.33□□□□□ -0.12
VRK3-210ENST00000596121 MASTLQ96GX5 879 aa14.33□□□□□ -0.12
VRK3-210ENST00000596121 METTL22Q9BUU2 404 aaPredicted RBP14.33□□□□□ -0.12
VRK3-210ENST00000596121 CHMP4AQ9BY43 222 aa14.33□□□□□ -0.12
VRK3-210ENST00000596121 PDZRN3Q9UPQ7 1066 aa14.33□□□□□ -0.12
VRK3-210ENST00000596121 ARFGEF2Q9Y6D5 1785 aa14.32□□□□□ -0.12
VRK3-210ENST00000596121 NPR1P16066 1061 aa14.32□□□□□ -0.12
VRK3-210ENST00000596121 FLIIQ13045 1269 aa14.32□□□□□ -0.12
VRK3-210ENST00000596121 OLFM4Q6UX06 510 aa14.32□□□□□ -0.12
VRK3-210ENST00000596121 C7orf43Q8WVR3 580 aa14.32□□□□□ -0.12
VRK3-210ENST00000596121 JARID2Q92833 1246 aaPredicted RBP14.32□□□□□ -0.12
VRK3-210ENST00000596121 FAM89AQ96GI7 184 aa14.32□□□□□ -0.12
VRK3-210ENST00000596121 ZNF219Q9P2Y4 722 aaPredicted RBP14.32□□□□□ -0.12
VRK3-210ENST00000596121 TRMT112Q9UI30 125 aaKnown RBP14.32□□□□□ -0.12
VRK3-210ENST00000596121 RIC1Q4ADV7 1423 aa14.32□□□□□ -0.12
VRK3-210ENST00000596121 SLX4Q8IY92 1834 aa14.31□□□□□ -0.12
VRK3-210ENST00000596121 ARFGEF1Q9Y6D6 1849 aa14.31□□□□□ -0.12
VRK3-210ENST00000596121 CHD4Q14839 1912 aa14.31□□□□□ -0.12
VRK3-210ENST00000596121 C21orf2O43822 256 aa14.31□□□□□ -0.12
VRK3-210ENST00000596121 IGKV5-2P06315 115 aa14.31□□□□□ -0.12
VRK3-210ENST00000596121 PRPF40BQ6NWY9 871 aaKnown RBP14.31□□□□□ -0.12
VRK3-210ENST00000596121 HOXA10P31260 410 aaPredicted RBP14.3□□□□□ -0.12
VRK3-210ENST00000596121 RASSF7Q02833 373 aa14.3□□□□□ -0.12
VRK3-210ENST00000596121 RTL5Q5HYW3 569 aaPredicted RBP14.3□□□□□ -0.12
VRK3-210ENST00000596121 CNKSR1Q969H4 720 aa14.3□□□□□ -0.12
VRK3-210ENST00000596121 SH3TC1Q8TE82 1336 aa14.3□□□□□ -0.12
VRK3-210ENST00000596121 NFKBIEO00221 500 aa14.29□□□□□ -0.12
VRK3-210ENST00000596121 DDX58O95786 925 aaKnown RBP14.29□□□□□ -0.12
VRK3-210ENST00000596121 CWF19L2Q2TBE0 894 aaKnown RBP14.29□□□□□ -0.12
VRK3-210ENST00000596121 MRPL50Q8N5N7 158 aaKnown RBP14.29□□□□□ -0.12
VRK3-210ENST00000596121 RNF123Q5XPI4 1314 aa14.29□□□□□ -0.12
VRK3-210ENST00000596121 F6X3S4 739 aa14.28□□□□□ -0.12
VRK3-210ENST00000596121 HNRNPUQ00839 825 aaKnown RBP eCLIP14.28□□□□□ -0.12
VRK3-210ENST00000596121 ZNF784Q8NCA9 323 aaPredicted RBP14.28□□□□□ -0.12
VRK3-210ENST00000596121 SSH1Q8WYL5 1049 aa14.28□□□□□ -0.12
VRK3-210ENST00000596121 NLRP3Q96P20 1036 aa14.28□□□□□ -0.12
VRK3-210ENST00000596121 NEURL1BA8MQ27 555 aa14.27□□□□□ -0.13
VRK3-210ENST00000596121 FKBP5Q13451 457 aaPredicted RBP14.27□□□□□ -0.13
VRK3-210ENST00000596121 C9orf131Q5VYM1 1079 aa14.27□□□□□ -0.13
VRK3-210ENST00000596121 ZBTB38Q8NAP3 1195 aaPredicted RBP14.27□□□□□ -0.13
VRK3-210ENST00000596121 CCDC191Q8NCU4 936 aa14.27□□□□□ -0.13
VRK3-210ENST00000596121 CWC25Q9NXE8 425 aaPredicted RBP14.27□□□□□ -0.13
VRK3-210ENST00000596121 IRS4O14654 1257 aaPredicted RBP14.26□□□□□ -0.13
VRK3-210ENST00000596121 PCCAP05165 728 aaPredicted RBP14.26□□□□□ -0.13
VRK3-210ENST00000596121 ALDH1B1P30837 517 aa14.26□□□□□ -0.13
VRK3-210ENST00000596121 DNAAF4Q8WXU2 420 aa14.26□□□□□ -0.13
VRK3-210ENST00000596121 RPGRQ92834 1020 aaKnown RBP14.26□□□□□ -0.13
VRK3-210ENST00000596121 RBM17Q96I25 401 aaKnown RBP14.26□□□□□ -0.13
VRK3-210ENST00000596121 CRAMP1Q96RY5 1269 aa14.26□□□□□ -0.13
VRK3-210ENST00000596121 BCL2L13Q9BXK5 485 aa14.26□□□□□ -0.13
VRK3-210ENST00000596121 DDX60Q8IY21 1712 aaKnown RBP14.26□□□□□ -0.13
VRK3-210ENST00000596121 COL4A1P02462 1669 aa14.26□□□□□ -0.13
VRK3-210ENST00000596121 SNED1Q8TER0 1413 aa14.25□□□□□ -0.13
VRK3-210ENST00000596121 CACNA1SQ13698 1873 aa14.25□□□□□ -0.13
VRK3-210ENST00000596121 LAMB2P55268 1798 aa14.25□□□□□ -0.13
VRK3-210ENST00000596121 ABCC4O15439 1325 aa14.25□□□□□ -0.13
VRK3-210ENST00000596121 SF3B3Q15393 1217 aaKnown RBP14.25□□□□□ -0.13
VRK3-210ENST00000596121 CACNA1FO60840 1977 aa14.25□□□□□ -0.13
VRK3-210ENST00000596121 H7C1W4 665 aa14.24□□□□□ -0.13
VRK3-210ENST00000596121 CASP7P55210 303 aa14.24□□□□□ -0.13
VRK3-210ENST00000596121 BEND3Q5T5X7 828 aa14.24□□□□□ -0.13
VRK3-210ENST00000596121 SBF1O95248 1867 aa14.24□□□□□ -0.13
VRK3-210ENST00000596121 NEXNQ0ZGT2 675 aa14.23□□□□□ -0.13
VRK3-210ENST00000596121 GCKRQ14397 625 aa14.23□□□□□ -0.13
VRK3-210ENST00000596121 LINS1Q8NG48 757 aa14.23□□□□□ -0.13
VRK3-210ENST00000596121 RNF181Q9P0P0 153 aa14.23□□□□□ -0.13
VRK3-210ENST00000596121 TAF1P21675 1872 aa14.23□□□□□ -0.13
VRK3-210ENST00000596121 FER1L6Q2WGJ9 1857 aa14.23□□□□□ -0.13
VRK3-210ENST00000596121 LMNB1P20700 586 aa14.22□□□□□ -0.13
VRK3-210ENST00000596121 CCDC93Q567U6 631 aa14.22□□□□□ -0.13
VRK3-210ENST00000596121 CELF1Q92879 486 aaKnown RBP14.22□□□□□ -0.13
VRK3-210ENST00000596121 CDHR2Q9BYE9 1310 aa14.21□□□□□ -0.13
VRK3-210ENST00000596121 LTBP3Q9NS15 1303 aa14.21□□□□□ -0.13
VRK3-210ENST00000596121 PPEF1O14829 653 aaPredicted RBP14.21□□□□□ -0.13
VRK3-210ENST00000596121 ALDH1L2Q3SY69 923 aa14.21□□□□□ -0.13
VRK3-210ENST00000596121 UBE3BQ7Z3V4 1068 aa14.21□□□□□ -0.13
VRK3-210ENST00000596121 CCDC85AQ96PX6 553 aaPredicted RBP14.21□□□□□ -0.13
VRK3-210ENST00000596121 TAOK3Q9H2K8 898 aa14.21□□□□□ -0.13
VRK3-210ENST00000596121 SEC31BQ9NQW1 1179 aa14.21□□□□□ -0.13
VRK3-210ENST00000596121 PDE8AO60658 829 aa14.2□□□□□ -0.14
VRK3-210ENST00000596121 CT47B1P0C2W7 299 aaPredicted RBP14.2□□□□□ -0.14
VRK3-210ENST00000596121 RARSP54136 660 aaKnown RBP14.2□□□□□ -0.14
VRK3-210ENST00000596121 GRAPQ13588 217 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms