RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 WBP1LQ9NX94 342 aa13.24□□□□□ -0.29
LIG1-209ENST00000596104 CLEC11AQ9Y240 323 aa13.24□□□□□ -0.29
LIG1-209ENST00000596104 CACNA1SQ13698 1873 aa13.24□□□□□ -0.29
LIG1-209ENST00000596104 GPTP24298 496 aa13.23□□□□□ -0.29
LIG1-209ENST00000596104 CTCFP49711 727 aaPredicted RBP13.23□□□□□ -0.29
LIG1-209ENST00000596104 SUSD4Q5VX71 490 aa13.23□□□□□ -0.29
LIG1-209ENST00000596104 JDP2Q8WYK2 163 aa13.23□□□□□ -0.29
LIG1-209ENST00000596104 THUMPD2Q9BTF0 503 aaKnown RBP13.23□□□□□ -0.29
LIG1-209ENST00000596104 RRP7AQ9Y3A4 280 aaKnown RBP13.23□□□□□ -0.29
LIG1-209ENST00000596104 NTSR2O95665 410 aa13.22□□□□□ -0.29
LIG1-209ENST00000596104 ZNF34Q8IZ26 560 aa13.22□□□□□ -0.29
LIG1-209ENST00000596104 ZBTB3Q9H5J0 574 aa13.22□□□□□ -0.29
LIG1-209ENST00000596104 MYL6BP14649 208 aa13.21□□□□□ -0.29
LIG1-209ENST00000596104 SCNN1DP51172 638 aa13.21□□□□□ -0.29
LIG1-209ENST00000596104 EIF6P56537 245 aaKnown RBP13.21□□□□□ -0.29
LIG1-209ENST00000596104 NFE2L2Q16236 605 aa13.21□□□□□ -0.29
LIG1-209ENST00000596104 KIF6Q6ZMV9 814 aa13.21□□□□□ -0.29
LIG1-209ENST00000596104 C3orf67Q6ZVT6 689 aa13.21□□□□□ -0.29
LIG1-209ENST00000596104 LRP10Q7Z4F1 713 aa13.21□□□□□ -0.29
LIG1-209ENST00000596104 RPGRQ92834 1020 aaKnown RBP13.21□□□□□ -0.29
LIG1-209ENST00000596104 AIDAQ96BJ3 306 aa13.21□□□□□ -0.29
LIG1-209ENST00000596104 CRAMP1Q96RY5 1269 aa13.21□□□□□ -0.29
LIG1-209ENST00000596104 GJA3Q9Y6H8 435 aa13.21□□□□□ -0.29
LIG1-209ENST00000596104 LAMB4A4D0S4 1761 aa13.21□□□□□ -0.29
LIG1-209ENST00000596104 ERBB4Q15303 1308 aa13.2□□□□□ -0.3
LIG1-209ENST00000596104 NEFMP07197 916 aa13.2□□□□□ -0.3
LIG1-209ENST00000596104 DEFB115Q30KQ5 88 aa13.2□□□□□ -0.3
LIG1-209ENST00000596104 GRIPAP1Q4V328 841 aa13.2□□□□□ -0.3
LIG1-209ENST00000596104 GIGYF2Q6Y7W6 1299 aaKnown RBP13.2□□□□□ -0.3
LIG1-209ENST00000596104 LARGE2Q8N3Y3 721 aa13.2□□□□□ -0.3
LIG1-209ENST00000596104 DDX21Q9NR30 783 aaKnown RBP eCLIP13.2□□□□□ -0.3
LIG1-209ENST00000596104 PPEF1O14829 653 aaPredicted RBP13.19□□□□□ -0.3
LIG1-209ENST00000596104 EPS15P42566 896 aa13.19□□□□□ -0.3
LIG1-209ENST00000596104 LBX1P52954 281 aa13.19□□□□□ -0.3
LIG1-209ENST00000596104 FMR1Q06787 632 aaKnown RBP eCLIP13.19□□□□□ -0.3
LIG1-209ENST00000596104 RBM17Q96I25 401 aaKnown RBP13.19□□□□□ -0.3
LIG1-209ENST00000596104 KDM3BQ7LBC6 1761 aa13.19□□□□□ -0.3
LIG1-209ENST00000596104 LTBP1Q14766 1721 aa13.19□□□□□ -0.3
LIG1-209ENST00000596104 WDR33Q9C0J8 1336 aaKnown RBP13.18□□□□□ -0.3
LIG1-209ENST00000596104 HSPA8P11142 646 aaKnown RBP13.18□□□□□ -0.3
LIG1-209ENST00000596104 LMOD1P29536 600 aaPredicted RBP13.18□□□□□ -0.3
LIG1-209ENST00000596104 PDIA6Q15084 440 aa13.18□□□□□ -0.3
LIG1-209ENST00000596104 PARP10Q53GL7 1025 aa13.18□□□□□ -0.3
LIG1-209ENST00000596104 ABT1Q9ULW3 272 aaKnown RBP13.18□□□□□ -0.3
LIG1-209ENST00000596104 TCERG1O14776 1098 aaKnown RBP13.17□□□□□ -0.3
LIG1-209ENST00000596104 SLC10A5Q5PT55 438 aa13.17□□□□□ -0.3
LIG1-209ENST00000596104 USP50Q70EL3 339 aaPredicted RBP13.17□□□□□ -0.3
LIG1-209ENST00000596104 PPP1R42Q7Z4L9 355 aa13.17□□□□□ -0.3
LIG1-209ENST00000596104 NIM1KQ8IY84 436 aa13.17□□□□□ -0.3
LIG1-209ENST00000596104 ATP6V0A2Q9Y487 856 aa13.17□□□□□ -0.3
LIG1-209ENST00000596104 PPIP5K2O43314 1243 aa13.16□□□□□ -0.3
LIG1-209ENST00000596104 MAP2K1Q02750 393 aaPredicted RBP13.16□□□□□ -0.3
LIG1-209ENST00000596104 PROSER3Q2NL68 480 aa13.16□□□□□ -0.3
LIG1-209ENST00000596104 CST9Q5W186 159 aa13.16□□□□□ -0.3
LIG1-209ENST00000596104 NLRP3Q96P20 1036 aa13.16□□□□□ -0.3
LIG1-209ENST00000596104 RTFDC1Q9BY42 306 aaPredicted RBP13.16□□□□□ -0.3
LIG1-209ENST00000596104 TRAF5O00463 557 aa13.15□□□□□ -0.3
LIG1-209ENST00000596104 AOC3Q16853 763 aa13.15□□□□□ -0.3
LIG1-209ENST00000596104 CAPNS2Q96L46 248 aa13.15□□□□□ -0.3
LIG1-209ENST00000596104 UTP14AQ9BVJ6 771 aaKnown RBP13.15□□□□□ -0.3
LIG1-209ENST00000596104 VPS33BQ9H267 617 aa13.15□□□□□ -0.3
LIG1-209ENST00000596104 GPRC5DQ9NZD1 345 aa13.15□□□□□ -0.3
LIG1-209ENST00000596104 TSPYL4Q9UJ04 414 aa13.15□□□□□ -0.3
LIG1-209ENST00000596104 ABCC4O15439 1325 aa13.14□□□□□ -0.31
LIG1-209ENST00000596104 MAPK8IP3Q9UPT6 1336 aa13.14□□□□□ -0.31
LIG1-209ENST00000596104 NUP98P52948 1817 aa13.14□□□□□ -0.31
LIG1-209ENST00000596104 ANXA1P04083 346 aa13.14□□□□□ -0.31
LIG1-209ENST00000596104 CXCL9Q07325 125 aa13.14□□□□□ -0.31
LIG1-209ENST00000596104 PNNQ9H307 717 aaKnown RBP13.14□□□□□ -0.31
LIG1-209ENST00000596104 ADARB2Q9NS39 739 aaKnown RBP13.14□□□□□ -0.31
LIG1-209ENST00000596104 ZNRF3Q9ULT6 936 aa13.14□□□□□ -0.31
LIG1-209ENST00000596104 EIF2S2P20042 333 aaKnown RBP13.13□□□□□ -0.31
LIG1-209ENST00000596104 ECE1P42892 770 aa13.13□□□□□ -0.31
LIG1-209ENST00000596104 CYP4F22Q6NT55 531 aa13.13□□□□□ -0.31
LIG1-209ENST00000596104 ABHD8Q96I13 439 aa13.13□□□□□ -0.31
LIG1-209ENST00000596104 BABAM1Q9NWV8 329 aa13.13□□□□□ -0.31
LIG1-209ENST00000596104 TLL2Q9Y6L7 1015 aa13.13□□□□□ -0.31
LIG1-209ENST00000596104 THSD7BQ9C0I4 1608 aa13.13□□□□□ -0.31
LIG1-209ENST00000596104 DLG5Q8TDM6 1919 aa13.12□□□□□ -0.31
LIG1-209ENST00000596104 BBOX1O75936 387 aa13.12□□□□□ -0.31
LIG1-209ENST00000596104 HCLS1P14317 486 aaPredicted RBP13.12□□□□□ -0.31
LIG1-209ENST00000596104 GMPSP49915 693 aaPredicted RBP13.12□□□□□ -0.31
LIG1-209ENST00000596104 NLRP10Q86W26 655 aa13.12□□□□□ -0.31
LIG1-209ENST00000596104 SP8Q8IXZ3 490 aa13.12□□□□□ -0.31
LIG1-209ENST00000596104 SUPT20HQ8NEM7 779 aa13.12□□□□□ -0.31
LIG1-209ENST00000596104 GPR101Q96P66 508 aaPredicted RBP13.12□□□□□ -0.31
LIG1-209ENST00000596104 TMX4Q9H1E5 349 aaPredicted RBP13.12□□□□□ -0.31
LIG1-209ENST00000596104 PGAP2Q9UHJ9 254 aa13.12□□□□□ -0.31
LIG1-209ENST00000596104 RIPK4P57078 832 aa13.11□□□□□ -0.31
LIG1-209ENST00000596104 KIAA2012Q0VF49 1180 aa13.11□□□□□ -0.31
LIG1-209ENST00000596104 DPP8Q6V1X1 898 aaPredicted RBP13.11□□□□□ -0.31
LIG1-209ENST00000596104 COPS6Q7L5N1 327 aa13.11□□□□□ -0.31
LIG1-209ENST00000596104 XAGE3Q8WTP9 111 aa13.11□□□□□ -0.31
LIG1-209ENST00000596104 CDHR2Q9BYE9 1310 aa13.11□□□□□ -0.31
LIG1-209ENST00000596104 TMPOP42166 694 aaKnown RBP13.1□□□□□ -0.31
LIG1-209ENST00000596104 HIRAP54198 1017 aaPredicted RBP13.1□□□□□ -0.31
LIG1-209ENST00000596104 TCIRG1Q13488 830 aa13.1□□□□□ -0.31
LIG1-209ENST00000596104 GRAPQ13588 217 aa13.1□□□□□ -0.31
LIG1-209ENST00000596104 HSP90AB3PQ58FF7 597 aa13.1□□□□□ -0.31
LIG1-209ENST00000596104 CIAPIN1Q6FI81 312 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms