RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 ERBB4Q15303 1308 aa13.39□□□□□ -0.27
SHKBP1-210ENST00000595874 C7orf43Q8WVR3 580 aa13.39□□□□□ -0.27
SHKBP1-210ENST00000595874 JARID2Q92833 1246 aaPredicted RBP13.39□□□□□ -0.27
SHKBP1-210ENST00000595874 CFAP44Q96MT7 982 aa13.39□□□□□ -0.27
SHKBP1-210ENST00000595874 PHAXQ9H814 394 aaKnown RBP13.39□□□□□ -0.27
SHKBP1-210ENST00000595874 DDX21Q9NR30 783 aaKnown RBP eCLIP13.39□□□□□ -0.27
SHKBP1-210ENST00000595874 BABAM1Q9NWV8 329 aa13.39□□□□□ -0.27
SHKBP1-210ENST00000595874 ANKRD36CQ5JPF3 1778 aa13.39□□□□□ -0.27
SHKBP1-210ENST00000595874 TAF1P21675 1872 aa13.38□□□□□ -0.27
SHKBP1-210ENST00000595874 NLRP10Q86W26 655 aa13.38□□□□□ -0.27
SHKBP1-210ENST00000595874 C8orf58Q8NAV2 365 aa13.38□□□□□ -0.27
SHKBP1-210ENST00000595874 TRMT112Q9UI30 125 aaKnown RBP13.38□□□□□ -0.27
SHKBP1-210ENST00000595874 DICER1Q9UPY3 1922 aaKnown RBP13.38□□□□□ -0.27
SHKBP1-210ENST00000595874 ZNF541Q9H0D2 1346 aa13.38□□□□□ -0.27
SHKBP1-210ENST00000595874 LAMB2P55268 1798 aa13.37□□□□□ -0.27
SHKBP1-210ENST00000595874 KLRG2A4D1S0 409 aaPredicted RBP13.37□□□□□ -0.27
SHKBP1-210ENST00000595874 POTECB2RU33 542 aa13.37□□□□□ -0.27
SHKBP1-210ENST00000595874 PPEF1O14829 653 aaPredicted RBP13.37□□□□□ -0.27
SHKBP1-210ENST00000595874 POTEIP0CG38 1075 aa13.37□□□□□ -0.27
SHKBP1-210ENST00000595874 POTEJP0CG39 1038 aa13.37□□□□□ -0.27
SHKBP1-210ENST00000595874 ALDH1B1P30837 517 aa13.37□□□□□ -0.27
SHKBP1-210ENST00000595874 FKBP4Q02790 459 aaKnown RBP eCLIP13.37□□□□□ -0.27
SHKBP1-210ENST00000595874 FAM9BQ8IZU0 186 aa13.37□□□□□ -0.27
SHKBP1-210ENST00000595874 TSPYL6Q8N831 410 aa13.37□□□□□ -0.27
SHKBP1-210ENST00000595874 RBM17Q96I25 401 aaKnown RBP13.37□□□□□ -0.27
SHKBP1-210ENST00000595874 NLRP3Q96P20 1036 aa13.37□□□□□ -0.27
SHKBP1-210ENST00000595874 ZNF853P0CG23 659 aa13.36□□□□□ -0.27
SHKBP1-210ENST00000595874 GNAI1P63096 354 aa13.36□□□□□ -0.27
SHKBP1-210ENST00000595874 TCIRG1Q13488 830 aa13.36□□□□□ -0.27
SHKBP1-210ENST00000595874 PARP10Q53GL7 1025 aa13.36□□□□□ -0.27
SHKBP1-210ENST00000595874 DPY19L2Q6NUT2 758 aa13.36□□□□□ -0.27
SHKBP1-210ENST00000595874 FAM89AQ96GI7 184 aa13.36□□□□□ -0.27
SHKBP1-210ENST00000595874 IFT57Q9NWB7 429 aa13.36□□□□□ -0.27
SHKBP1-210ENST00000595874 VEGFAP15692 232 aaPredicted RBP13.35□□□□□ -0.27
SHKBP1-210ENST00000595874 CRY2Q49AN0 593 aa13.35□□□□□ -0.27
SHKBP1-210ENST00000595874 SOGA3Q5TF21 947 aa13.35□□□□□ -0.27
SHKBP1-210ENST00000595874 ANKRD13DQ6ZTN6 518 aa13.35□□□□□ -0.27
SHKBP1-210ENST00000595874 RIC3Q7Z5B4 369 aa13.35□□□□□ -0.27
SHKBP1-210ENST00000595874 RBM46Q8TBY0 533 aaKnown RBP13.35□□□□□ -0.27
SHKBP1-210ENST00000595874 MYD88Q99836 296 aa13.35□□□□□ -0.27
SHKBP1-210ENST00000595874 DBF4Q9UBU7 674 aaPredicted RBP13.35□□□□□ -0.27
SHKBP1-210ENST00000595874 GJA3Q9Y6H8 435 aa13.35□□□□□ -0.27
SHKBP1-210ENST00000595874 ABCC4O15439 1325 aa13.35□□□□□ -0.27
SHKBP1-210ENST00000595874 LTBP3Q9NS15 1303 aa13.35□□□□□ -0.27
SHKBP1-210ENST00000595874 RGL2O15211 777 aa13.34□□□□□ -0.27
SHKBP1-210ENST00000595874 IARSP41252 1262 aaKnown RBP13.34□□□□□ -0.27
SHKBP1-210ENST00000595874 HSP90AB3PQ58FF7 597 aa13.34□□□□□ -0.27
SHKBP1-210ENST00000595874 CCDC85AQ96PX6 553 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-210ENST00000595874 COL4A5P29400 1685 aa13.34□□□□□ -0.27
SHKBP1-210ENST00000595874 EAPPQ56P03 285 aaPredicted RBP13.33□□□□□ -0.28
SHKBP1-210ENST00000595874 RTKN2Q8IZC4 609 aa13.33□□□□□ -0.28
SHKBP1-210ENST00000595874 PLBD2Q8NHP8 589 aa13.33□□□□□ -0.28
SHKBP1-210ENST00000595874 SH3TC1Q8TE82 1336 aa13.33□□□□□ -0.28
SHKBP1-210ENST00000595874 WDR90Q96KV7 1748 aa13.33□□□□□ -0.28
SHKBP1-210ENST00000595874 IBTKQ9P2D0 1353 aaPredicted RBP13.32□□□□□ -0.28
SHKBP1-210ENST00000595874 COL4A1P02462 1669 aa13.32□□□□□ -0.28
SHKBP1-210ENST00000595874 CALD1Q05682 793 aaKnown RBP13.32□□□□□ -0.28
SHKBP1-210ENST00000595874 GOLGA2Q08379 1002 aa13.32□□□□□ -0.28
SHKBP1-210ENST00000595874 AOC3Q16853 763 aa13.32□□□□□ -0.28
SHKBP1-210ENST00000595874 WWC1Q8IX03 1113 aa13.32□□□□□ -0.28
SHKBP1-210ENST00000595874 LARGE2Q8N3Y3 721 aa13.32□□□□□ -0.28
SHKBP1-210ENST00000595874 SMC1BQ8NDV3 1235 aa13.32□□□□□ -0.28
SHKBP1-210ENST00000595874 HYPKQ9NX55 129 aa13.32□□□□□ -0.28
SHKBP1-210ENST00000595874 DDX60Q8IY21 1712 aaKnown RBP13.32□□□□□ -0.28
SHKBP1-210ENST00000595874 RNF123Q5XPI4 1314 aa13.32□□□□□ -0.28
SHKBP1-210ENST00000595874 HOXA10P31260 410 aaPredicted RBP13.31□□□□□ -0.28
SHKBP1-210ENST00000595874 APLP1P51693 650 aa13.31□□□□□ -0.28
SHKBP1-210ENST00000595874 DDX46Q7L014 1031 aaKnown RBP13.31□□□□□ -0.28
SHKBP1-210ENST00000595874 G2E3Q7L622 706 aa13.31□□□□□ -0.28
SHKBP1-210ENST00000595874 GPR101Q96P66 508 aaPredicted RBP13.31□□□□□ -0.28
SHKBP1-210ENST00000595874 CRAMP1Q96RY5 1269 aa13.31□□□□□ -0.28
SHKBP1-210ENST00000595874 ISCA1Q9BUE6 129 aa13.31□□□□□ -0.28
SHKBP1-210ENST00000595874 CLEC11AQ9Y240 323 aa13.31□□□□□ -0.28
SHKBP1-210ENST00000595874 ZC3H4Q9UPT8 1303 aaKnown RBP13.31□□□□□ -0.28
SHKBP1-210ENST00000595874 PPIP5K2O43314 1243 aa13.3□□□□□ -0.28
SHKBP1-210ENST00000595874 HOXB7P09629 217 aa13.3□□□□□ -0.28
SHKBP1-210ENST00000595874 SLC10A5Q5PT55 438 aa13.3□□□□□ -0.28
SHKBP1-210ENST00000595874 RIC1Q4ADV7 1423 aa13.3□□□□□ -0.28
SHKBP1-210ENST00000595874 IRS4O14654 1257 aaPredicted RBP13.29□□□□□ -0.28
SHKBP1-210ENST00000595874 FSTL1Q12841 308 aa13.29□□□□□ -0.28
SHKBP1-210ENST00000595874 TWISTNBQ3B726 338 aaPredicted RBP13.29□□□□□ -0.28
SHKBP1-210ENST00000595874 CCDC30Q5VVM6 783 aa13.29□□□□□ -0.28
SHKBP1-210ENST00000595874 JDP2Q8WYK2 163 aa13.29□□□□□ -0.28
SHKBP1-210ENST00000595874 CELF1Q92879 486 aaKnown RBP13.29□□□□□ -0.28
SHKBP1-210ENST00000595874 TMX4Q9H1E5 349 aaPredicted RBP13.29□□□□□ -0.28
SHKBP1-210ENST00000595874 MAP3K2Q9Y2U5 619 aa13.29□□□□□ -0.28
SHKBP1-210ENST00000595874 SNED1Q8TER0 1413 aa13.29□□□□□ -0.28
SHKBP1-210ENST00000595874 RIMBP2O15034 1052 aa13.28□□□□□ -0.28
SHKBP1-210ENST00000595874 EIF6P56537 245 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-210ENST00000595874 GRAPQ13588 217 aa13.28□□□□□ -0.28
SHKBP1-210ENST00000595874 DPP8Q6V1X1 898 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-210ENST00000595874 NIM1KQ8IY84 436 aa13.28□□□□□ -0.28
SHKBP1-210ENST00000595874 GRAPLQ8TC17 118 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-210ENST00000595874 SEC31BQ9NQW1 1179 aa13.28□□□□□ -0.28
SHKBP1-210ENST00000595874 ATP6V0A2Q9Y487 856 aa13.28□□□□□ -0.28
SHKBP1-210ENST00000595874 MPNDQ8N594 471 aa13.27□□□□□ -0.29
SHKBP1-210ENST00000595874 PSMD1Q99460 953 aa13.27□□□□□ -0.29
SHKBP1-210ENST00000595874 STK31Q9BXU1 1019 aa13.27□□□□□ -0.29
SHKBP1-210ENST00000595874 TAF1DQ9H5J8 278 aaPredicted RBP13.27□□□□□ -0.29
SHKBP1-210ENST00000595874 SPINK5Q9NQ38 1064 aaPredicted RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms