RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 RNMTO43148 476 aaKnown RBP13.01□□□□□ -0.33
VPS4B-206ENST00000591475 POLA2Q14181 598 aa13.01□□□□□ -0.33
VPS4B-206ENST00000591475 PPP1R42Q7Z4L9 355 aa13.01□□□□□ -0.33
VPS4B-206ENST00000591475 MTERF4Q7Z6M4 381 aaKnown RBP13.01□□□□□ -0.33
VPS4B-206ENST00000591475 CNTROBQ8N137 903 aa13.01□□□□□ -0.33
VPS4B-206ENST00000591475 RHPN1Q8TCX5 695 aa13.01□□□□□ -0.33
VPS4B-206ENST00000591475 KIF1BPQ96EK5 621 aa13.01□□□□□ -0.33
VPS4B-206ENST00000591475 DCAF5Q96JK2 942 aa13.01□□□□□ -0.33
VPS4B-206ENST00000591475 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.01□□□□□ -0.33
VPS4B-206ENST00000591475 SPATA31A5Q5VU36 1347 aa13.01□□□□□ -0.33
VPS4B-206ENST00000591475 SPATA31A7Q8IWB4 1347 aa13.01□□□□□ -0.33
VPS4B-206ENST00000591475 BCL9LQ86UU0 1499 aa13.01□□□□□ -0.33
VPS4B-206ENST00000591475 PKD1L3Q7Z443 1732 aa13.01□□□□□ -0.33
VPS4B-206ENST00000591475 MAP4K4O95819 1239 aaPredicted RBP13.01□□□□□ -0.33
VPS4B-206ENST00000591475 HDGFL1Q5TGJ6 251 aa13.01□□□□□ -0.33
VPS4B-206ENST00000591475 TTC14Q96N46 770 aa13.01□□□□□ -0.33
VPS4B-206ENST00000591475 LIMCH1Q9UPQ0 1083 aa13.01□□□□□ -0.33
VPS4B-206ENST00000591475 CCDC9Q9Y3X0 531 aaKnown RBP13.01□□□□□ -0.33
VPS4B-206ENST00000591475 DISP2A7MBM2 1401 aa13□□□□□ -0.33
VPS4B-206ENST00000591475 AK2P54819 239 aa13□□□□□ -0.33
VPS4B-206ENST00000591475 UBE2HP62256 183 aa13□□□□□ -0.33
VPS4B-206ENST00000591475 VPS72Q15906 364 aa13□□□□□ -0.33
VPS4B-206ENST00000591475 PKNOX2Q96KN3 472 aa13□□□□□ -0.33
VPS4B-206ENST00000591475 LSG1Q9H089 658 aaKnown RBP13□□□□□ -0.33
VPS4B-206ENST00000591475 USP21Q9UK80 565 aa13□□□□□ -0.33
VPS4B-206ENST00000591475 CNPY2Q9Y2B0 182 aa13□□□□□ -0.33
VPS4B-206ENST00000591475 ATP6V1DQ9Y5K8 247 aa13□□□□□ -0.33
VPS4B-206ENST00000591475 STX6O43752 255 aa13□□□□□ -0.33
VPS4B-206ENST00000591475 KLHL34Q8N239 644 aa13□□□□□ -0.33
VPS4B-206ENST00000591475 SMC3Q9UQE7 1217 aa13□□□□□ -0.33
VPS4B-206ENST00000591475 EXOC5O00471 708 aa12.99□□□□□ -0.33
VPS4B-206ENST00000591475 SRGAP3O43295 1099 aa12.99□□□□□ -0.33
VPS4B-206ENST00000591475 HSP90AB4PQ58FF6 505 aa12.99□□□□□ -0.33
VPS4B-206ENST00000591475 BARGINQ6ZT62 677 aa12.99□□□□□ -0.33
VPS4B-206ENST00000591475 F13A1P00488 732 aa12.98□□□□□ -0.33
VPS4B-206ENST00000591475 SYT1P21579 422 aa12.98□□□□□ -0.33
VPS4B-206ENST00000591475 RUFY3Q7L099 469 aa12.98□□□□□ -0.33
VPS4B-206ENST00000591475 DDX54Q8TDD1 881 aaKnown RBP12.98□□□□□ -0.33
VPS4B-206ENST00000591475 PHAXQ9H814 394 aaKnown RBP12.98□□□□□ -0.33
VPS4B-206ENST00000591475 KDM3BQ7LBC6 1761 aa12.98□□□□□ -0.33
VPS4B-206ENST00000591475 USP42Q9H9J4 1324 aaKnown RBP12.98□□□□□ -0.33
VPS4B-206ENST00000591475 NKX1-1Q15270 411 aaPredicted RBP12.98□□□□□ -0.33
VPS4B-206ENST00000591475 USP25Q9UHP3 1055 aa12.98□□□□□ -0.33
VPS4B-206ENST00000591475 KDM6AO15550 1401 aaPredicted RBP12.97□□□□□ -0.33
VPS4B-206ENST00000591475 ADAMTS7Q9UKP4 1686 aa12.97□□□□□ -0.33
VPS4B-206ENST00000591475 TTC41PQ6P2S7 1318 aa12.97□□□□□ -0.33
VPS4B-206ENST00000591475 BTBD11A6QL63 1104 aa12.97□□□□□ -0.33
VPS4B-206ENST00000591475 ADCY5O95622 1261 aa12.97□□□□□ -0.33
VPS4B-206ENST00000591475 DNTTIP2Q5QJE6 756 aaKnown RBP12.97□□□□□ -0.33
VPS4B-206ENST00000591475 RASEFQ8IZ41 740 aa12.97□□□□□ -0.33
VPS4B-206ENST00000591475 RUFY2Q8WXA3 655 aa12.97□□□□□ -0.33
VPS4B-206ENST00000591475 PIBF1Q8WXW3 757 aa12.97□□□□□ -0.33
VPS4B-206ENST00000591475 CHMP4AQ9BY43 222 aa12.97□□□□□ -0.33
VPS4B-206ENST00000591475 SLC52A2Q9HAB3 445 aa12.97□□□□□ -0.33
VPS4B-206ENST00000591475 GLRX3O76003 335 aaKnown RBP12.96□□□□□ -0.33
VPS4B-206ENST00000591475 CWC27Q6UX04 472 aaKnown RBP12.96□□□□□ -0.33
VPS4B-206ENST00000591475 DIAPH3Q9NSV4 1193 aa12.96□□□□□ -0.33
VPS4B-206ENST00000591475 AFF2P51816 1311 aa12.96□□□□□ -0.33
VPS4B-206ENST00000591475 HCLS1P14317 486 aaPredicted RBP12.96□□□□□ -0.34
VPS4B-206ENST00000591475 CASTP20810 708 aaKnown RBP12.96□□□□□ -0.34
VPS4B-206ENST00000591475 DDB1Q16531 1140 aa12.96□□□□□ -0.34
VPS4B-206ENST00000591475 ZSCAN31Q96LW9 406 aaPredicted RBP12.96□□□□□ -0.34
VPS4B-206ENST00000591475 ERVV-2B6SEH9 535 aa12.95□□□□□ -0.34
VPS4B-206ENST00000591475 FIBPO43427 364 aa12.95□□□□□ -0.34
VPS4B-206ENST00000591475 NBPF7P0C2Y1 421 aaPredicted RBP12.95□□□□□ -0.34
VPS4B-206ENST00000591475 NFATC2IPQ8NCF5 419 aa12.95□□□□□ -0.34
VPS4B-206ENST00000591475 MYRIPQ8NFW9 859 aa12.95□□□□□ -0.34
VPS4B-206ENST00000591475 PRIMPOLQ96LW4 560 aa12.95□□□□□ -0.34
VPS4B-206ENST00000591475 HYPKQ9NX55 129 aa12.95□□□□□ -0.34
VPS4B-206ENST00000591475 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.95□□□□□ -0.34
VPS4B-206ENST00000591475 TNS2Q63HR2 1409 aa12.95□□□□□ -0.34
VPS4B-206ENST00000591475 KDM4AO75164 1064 aa12.95□□□□□ -0.34
VPS4B-206ENST00000591475 HOXB7P09629 217 aa12.95□□□□□ -0.34
VPS4B-206ENST00000591475 CABP4P57796 275 aa12.95□□□□□ -0.34
VPS4B-206ENST00000591475 OS9Q13438 667 aaPredicted RBP12.95□□□□□ -0.34
VPS4B-206ENST00000591475 NOLC1Q14978 699 aaKnown RBP eCLIP12.95□□□□□ -0.34
VPS4B-206ENST00000591475 BEND3Q5T5X7 828 aa12.95□□□□□ -0.34
VPS4B-206ENST00000591475 VPS53Q5VIR6 699 aa12.95□□□□□ -0.34
VPS4B-206ENST00000591475 DNAAF4Q8WXU2 420 aa12.95□□□□□ -0.34
VPS4B-206ENST00000591475 LARP6Q9BRS8 491 aaKnown RBP12.95□□□□□ -0.34
VPS4B-206ENST00000591475 SH2B1Q9NRF2 756 aaPredicted RBP12.95□□□□□ -0.34
VPS4B-206ENST00000591475 EIF2S2P20042 333 aaKnown RBP12.94□□□□□ -0.34
VPS4B-206ENST00000591475 GJB2P29033 226 aa12.94□□□□□ -0.34
VPS4B-206ENST00000591475 HMGN5P82970 282 aaKnown RBP12.94□□□□□ -0.34
VPS4B-206ENST00000591475 CCDC83Q8IWF9 413 aa12.94□□□□□ -0.34
VPS4B-206ENST00000591475 TM6SF1Q9BZW5 370 aa12.94□□□□□ -0.34
VPS4B-206ENST00000591475 PDRG1Q9NUG6 133 aa12.94□□□□□ -0.34
VPS4B-206ENST00000591475 SCN11AQ9UI33 1791 aa12.93□□□□□ -0.34
VPS4B-206ENST00000591475 FAM98CQ17RN3 349 aaKnown RBP12.93□□□□□ -0.34
VPS4B-206ENST00000591475 TPRNQ4KMQ1 711 aa12.93□□□□□ -0.34
VPS4B-206ENST00000591475 GPATCH3Q96I76 525 aa12.93□□□□□ -0.34
VPS4B-206ENST00000591475 JAKMIP1Q96N16 626 aaKnown RBP12.93□□□□□ -0.34
VPS4B-206ENST00000591475 ZNF830Q96NB3 372 aaPredicted RBP12.93□□□□□ -0.34
VPS4B-206ENST00000591475 FUCA2Q9BTY2 467 aa12.93□□□□□ -0.34
VPS4B-206ENST00000591475 TRPC5Q9UL62 973 aaPredicted RBP12.93□□□□□ -0.34
VPS4B-206ENST00000591475 CYP46A1Q9Y6A2 500 aa12.93□□□□□ -0.34
VPS4B-206ENST00000591475 MRC1P22897 1456 aa12.93□□□□□ -0.34
VPS4B-206ENST00000591475 LARGE1O95461 756 aa12.93□□□□□ -0.34
VPS4B-206ENST00000591475 EIF4A1P60842 406 aaKnown RBP12.93□□□□□ -0.34
VPS4B-206ENST00000591475 CLASRPQ8N2M8 674 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms