RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 DESI1Q6ICB0 168 aa14.14□□□□□ -0.15
SS18-221ENST00000582448 DDRGK1Q96HY6 314 aa14.14□□□□□ -0.15
SS18-221ENST00000582448 STK32BQ9NY57 414 aa14.14□□□□□ -0.15
SS18-221ENST00000582448 CCNYL3P0C7X3 344 aa14.13□□□□□ -0.15
SS18-221ENST00000582448 PTPRNQ16849 979 aa14.13□□□□□ -0.15
SS18-221ENST00000582448 RTL5Q5HYW3 569 aaPredicted RBP14.13□□□□□ -0.15
SS18-221ENST00000582448 LMO7Q8WWI1 1683 aa14.13□□□□□ -0.15
SS18-221ENST00000582448 AATKQ6ZMQ8 1374 aa14.12□□□□□ -0.15
SS18-221ENST00000582448 EXOC5O00471 708 aa14.12□□□□□ -0.15
SS18-221ENST00000582448 NEUROD2Q15784 382 aa14.12□□□□□ -0.15
SS18-221ENST00000582448 SKOR1P84550 965 aa14.11□□□□□ -0.15
SS18-221ENST00000582448 TXNRD1Q16881 649 aa14.11□□□□□ -0.15
SS18-221ENST00000582448 SH3D19Q5HYK7 790 aa14.11□□□□□ -0.15
SS18-221ENST00000582448 WDR17Q8IZU2 1322 aa14.11□□□□□ -0.15
SS18-221ENST00000582448 BRPF1P55201 1214 aaPredicted RBP14.1□□□□□ -0.15
SS18-221ENST00000582448 SKIV2LQ15477 1246 aaKnown RBP14.1□□□□□ -0.15
SS18-221ENST00000582448 SLC15A2Q16348 729 aa14.1□□□□□ -0.15
SS18-221ENST00000582448 LYPD8Q6UX82 237 aa14.1□□□□□ -0.15
SS18-221ENST00000582448 PROCA1Q8NCQ7 364 aaPredicted RBP14.1□□□□□ -0.15
SS18-221ENST00000582448 ACSBG1Q96GR2 724 aa14.1□□□□□ -0.15
SS18-221ENST00000582448 CDCA7Q9BWT1 371 aaPredicted RBP14.1□□□□□ -0.15
SS18-221ENST00000582448 FHDC1Q9C0D6 1143 aaPredicted RBP14.1□□□□□ -0.15
SS18-221ENST00000582448 EVA1BQ9NVM1 165 aa14.1□□□□□ -0.15
SS18-221ENST00000582448 TOPAZ1Q8N9V7 1692 aa14.1□□□□□ -0.15
SS18-221ENST00000582448 USP6P35125 1406 aa14.09□□□□□ -0.15
SS18-221ENST00000582448 ZNF784Q8NCA9 323 aaPredicted RBP14.09□□□□□ -0.15
SS18-221ENST00000582448 CARD10Q9BWT7 1032 aa14.09□□□□□ -0.15
SS18-221ENST00000582448 PARP4Q9UKK3 1724 aaKnown RBP14.09□□□□□ -0.15
SS18-221ENST00000582448 BRD4O60885 1362 aaPredicted RBP14.09□□□□□ -0.15
SS18-221ENST00000582448 ARHGEF25Q86VW2 580 aa14.08□□□□□ -0.16
SS18-221ENST00000582448 KCNH5Q8NCM2 988 aa14.08□□□□□ -0.16
SS18-221ENST00000582448 SYT17Q9BSW7 474 aa14.08□□□□□ -0.16
SS18-221ENST00000582448 PER1O15534 1290 aaPredicted RBP14.07□□□□□ -0.16
SS18-221ENST00000582448 KCNH2Q12809 1159 aa14.07□□□□□ -0.16
SS18-221ENST00000582448 TTC21BQ7Z4L5 1316 aa14.07□□□□□ -0.16
SS18-221ENST00000582448 EVC2Q86UK5 1308 aa14.07□□□□□ -0.16
SS18-221ENST00000582448 HSPA5P11021 654 aaKnown RBP14.06□□□□□ -0.16
SS18-221ENST00000582448 PEAK1Q9H792 1746 aa14.05□□□□□ -0.16
SS18-221ENST00000582448 SENP3-EIF4A1A0A087X0R7 540 aa14.05□□□□□ -0.16
SS18-221ENST00000582448 WNT7AO00755 349 aa14.05□□□□□ -0.16
SS18-221ENST00000582448 PRKCSHP14314 528 aaPredicted RBP14.05□□□□□ -0.16
SS18-221ENST00000582448 TRAF7Q6Q0C0 670 aa14.05□□□□□ -0.16
SS18-221ENST00000582448 TSC1Q92574 1164 aa14.05□□□□□ -0.16
SS18-221ENST00000582448 MTFR1LQ9H019 292 aa14.05□□□□□ -0.16
SS18-221ENST00000582448 UNC93B1Q9H1C4 597 aa14.05□□□□□ -0.16
SS18-221ENST00000582448 LRRC37A3O60309 1634 aa14.04□□□□□ -0.16
SS18-221ENST00000582448 ARXQ96QS3 562 aa14.04□□□□□ -0.16
SS18-221ENST00000582448 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.04□□□□□ -0.16
SS18-221ENST00000582448 CARD11Q9BXL7 1154 aa14.04□□□□□ -0.16
SS18-221ENST00000582448 NLRP2Q9NX02 1062 aa14.04□□□□□ -0.16
SS18-221ENST00000582448 TOR4AQ9NXH8 423 aa14.04□□□□□ -0.16
SS18-221ENST00000582448 CPSF1Q10570 1443 aaKnown RBP14.04□□□□□ -0.16
SS18-221ENST00000582448 SLIT3O75094 1523 aa14.04□□□□□ -0.16
SS18-221ENST00000582448 SBF2Q86WG5 1849 aa14.04□□□□□ -0.16
SS18-221ENST00000582448 F12P00748 615 aaPredicted RBP14.03□□□□□ -0.16
SS18-221ENST00000582448 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.03□□□□□ -0.16
SS18-221ENST00000582448 MAP10Q9P2G4 905 aa14.03□□□□□ -0.16
SS18-221ENST00000582448 ROCK2O75116 1388 aaKnown RBP14.02□□□□□ -0.17
SS18-221ENST00000582448 FAM187AA6NFU0 413 aa14.02□□□□□ -0.17
SS18-221ENST00000582448 GPR162Q16538 588 aa14.02□□□□□ -0.17
SS18-221ENST00000582448 RC3H1Q5TC82 1133 aaKnown RBP14.02□□□□□ -0.17
SS18-221ENST00000582448 IL27Q8NEV9 243 aa14.02□□□□□ -0.17
SS18-221ENST00000582448 MRGPRX2Q96LB1 330 aa14.02□□□□□ -0.17
SS18-221ENST00000582448 CASZ1Q86V15 1759 aa14.01□□□□□ -0.17
SS18-221ENST00000582448 TTC21AQ8NDW8 1320 aa14.01□□□□□ -0.17
SS18-221ENST00000582448 WNT7BP56706 349 aa14.01□□□□□ -0.17
SS18-221ENST00000582448 KIAA1210Q9ULL0 1709 aa14.01□□□□□ -0.17
SS18-221ENST00000582448 MYOM1P52179 1685 aa14.01□□□□□ -0.17
SS18-221ENST00000582448 BCL9O00512 1426 aa14□□□□□ -0.17
SS18-221ENST00000582448 USP47Q96K76 1375 aa14□□□□□ -0.17
SS18-221ENST00000582448 CCDC7Q96M83 1385 aa14□□□□□ -0.17
SS18-221ENST00000582448 DGAT1O75907 488 aa14□□□□□ -0.17
SS18-221ENST00000582448 CTHP32929 405 aa14□□□□□ -0.17
SS18-221ENST00000582448 C1QTNF8P60827 252 aa14□□□□□ -0.17
SS18-221ENST00000582448 SH3BP2P78314 561 aa14□□□□□ -0.17
SS18-221ENST00000582448 LINC01559Q495D7 138 aa14□□□□□ -0.17
SS18-221ENST00000582448 PKDCCQ504Y2 493 aa14□□□□□ -0.17
SS18-221ENST00000582448 CYP4X1Q8N118 509 aa14□□□□□ -0.17
SS18-221ENST00000582448 BAP1Q92560 729 aa14□□□□□ -0.17
SS18-221ENST00000582448 COL18A1P39060 1754 aa14□□□□□ -0.17
SS18-221ENST00000582448 KTN1Q86UP2 1357 aaKnown RBP13.99□□□□□ -0.17
SS18-221ENST00000582448 IL2RBP14784 551 aa13.99□□□□□ -0.17
SS18-221ENST00000582448 DDX10Q13206 875 aaKnown RBP13.99□□□□□ -0.17
SS18-221ENST00000582448 PIK3C2AO00443 1686 aa13.98□□□□□ -0.17
SS18-221ENST00000582448 QRICH2Q9H0J4 1663 aa13.98□□□□□ -0.17
SS18-221ENST00000582448 ZNF827Q17R98 1081 aa13.98□□□□□ -0.17
SS18-221ENST00000582448 DDX54Q8TDD1 881 aaKnown RBP13.98□□□□□ -0.17
SS18-221ENST00000582448 TMC1Q8TDI8 760 aa13.98□□□□□ -0.17
SS18-221ENST00000582448 RGPD3A6NKT7 1758 aaPredicted RBP13.98□□□□□ -0.17
SS18-221ENST00000582448 RGPD4Q7Z3J3 1758 aa13.98□□□□□ -0.17
SS18-221ENST00000582448 RGPD5Q99666 1765 aa13.97□□□□□ -0.17
SS18-221ENST00000582448 CTDSPL2Q05D32 466 aa13.97□□□□□ -0.17
SS18-221ENST00000582448 NME9Q86XW9 330 aa13.97□□□□□ -0.17
SS18-221ENST00000582448 ANKRD24Q8TF21 1146 aa13.97□□□□□ -0.17
SS18-221ENST00000582448 LTV1Q96GA3 475 aaPredicted RBP13.97□□□□□ -0.17
SS18-221ENST00000582448 LRRC4BQ9NT99 713 aa13.97□□□□□ -0.17
SS18-221ENST00000582448 AKAP12Q02952 1782 aa13.96□□□□□ -0.17
SS18-221ENST00000582448 KCNQ4P56696 695 aa13.96□□□□□ -0.17
SS18-221ENST00000582448 PPP2R2DQ66LE6 453 aa13.96□□□□□ -0.17
SS18-221ENST00000582448 HELBQ8NG08 1087 aaPredicted RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms