RNA–Protein interactions for RNA: ENST00000580997.1

SENP3-204, Transcript of SUMO specific peptidase 3, humanhuman

TSL 2

Gene SENP3, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-204ENST00000580997 CCDC93Q567U6 631 aa16.31■□□□□ 0.2
SENP3-204ENST00000580997 NTSR2O95665 410 aa16.3■□□□□ 0.2
SENP3-204ENST00000580997 PARP10Q53GL7 1025 aa16.3■□□□□ 0.2
SENP3-204ENST00000580997 DNAJC5GQ8N7S2 189 aa16.3■□□□□ 0.2
SENP3-204ENST00000580997 CFAP44Q96MT7 982 aa16.3■□□□□ 0.2
SENP3-204ENST00000580997 ANXA1P04083 346 aa16.29■□□□□ 0.2
SENP3-204ENST00000580997 HOXB7P09629 217 aa16.29■□□□□ 0.2
SENP3-204ENST00000580997 KRT24Q2M2I5 525 aa16.29■□□□□ 0.2
SENP3-204ENST00000580997 SLC10A5Q5PT55 438 aa16.29■□□□□ 0.2
SENP3-204ENST00000580997 COPS6Q7L5N1 327 aa16.29■□□□□ 0.2
SENP3-204ENST00000580997 PPP1R42Q7Z4L9 355 aa16.29■□□□□ 0.2
SENP3-204ENST00000580997 RTKN2Q8IZC4 609 aa16.29■□□□□ 0.2
SENP3-204ENST00000580997 DDX21Q9NR30 783 aaKnown RBP eCLIP16.29■□□□□ 0.2
SENP3-204ENST00000580997 CCDC88AQ3V6T2 1871 aa16.29■□□□□ 0.2
SENP3-204ENST00000580997 TIAM2Q8IVF5 1701 aa16.28■□□□□ 0.2
SENP3-204ENST00000580997 FKBP4Q02790 459 aaKnown RBP eCLIP16.28■□□□□ 0.2
SENP3-204ENST00000580997 SMC1BQ8NDV3 1235 aa16.28■□□□□ 0.2
SENP3-204ENST00000580997 LAS1LQ9Y4W2 734 aaKnown RBP16.28■□□□□ 0.2
SENP3-204ENST00000580997 SNED1Q8TER0 1413 aa16.28■□□□□ 0.2
SENP3-204ENST00000580997 DICER1Q9UPY3 1922 aaKnown RBP16.27■□□□□ 0.2
SENP3-204ENST00000580997 HAX1O00165 279 aa16.27■□□□□ 0.2
SENP3-204ENST00000580997 ZNF853P0CG23 659 aa16.27■□□□□ 0.2
SENP3-204ENST00000580997 OLFM4Q6UX06 510 aa16.27■□□□□ 0.2
SENP3-204ENST00000580997 XAGE3Q8WTP9 111 aa16.27■□□□□ 0.2
SENP3-204ENST00000580997 CRAMP1Q96RY5 1269 aa16.27■□□□□ 0.2
SENP3-204ENST00000580997 WDR90Q96KV7 1748 aa16.27■□□□□ 0.19
SENP3-204ENST00000580997 RNF123Q5XPI4 1314 aa16.26■□□□□ 0.19
SENP3-204ENST00000580997 ZEB1P37275 1124 aaPredicted RBP16.26■□□□□ 0.19
SENP3-204ENST00000580997 HSP90AB3PQ58FF7 597 aa16.26■□□□□ 0.19
SENP3-204ENST00000580997 CC2D2BQ6DHV5 1058 aa16.26■□□□□ 0.19
SENP3-204ENST00000580997 NECTIN2Q92692 538 aa16.26■□□□□ 0.19
SENP3-204ENST00000580997 PSMD1Q99460 953 aa16.26■□□□□ 0.19
SENP3-204ENST00000580997 UTP14AQ9BVJ6 771 aaKnown RBP16.26■□□□□ 0.19
SENP3-204ENST00000580997 APAF1O14727 1248 aa16.25■□□□□ 0.19
SENP3-204ENST00000580997 DDNO94850 711 aaPredicted RBP16.25■□□□□ 0.19
SENP3-204ENST00000580997 TCIRG1Q13488 830 aa16.25■□□□□ 0.19
SENP3-204ENST00000580997 GRIPAP1Q4V328 841 aa16.25■□□□□ 0.19
SENP3-204ENST00000580997 HDGFL1Q5TGJ6 251 aa16.25■□□□□ 0.19
SENP3-204ENST00000580997 NLRP10Q86W26 655 aa16.25■□□□□ 0.19
SENP3-204ENST00000580997 RPGRQ92834 1020 aaKnown RBP16.25■□□□□ 0.19
SENP3-204ENST00000580997 NLRP3Q96P20 1036 aa16.25■□□□□ 0.19
SENP3-204ENST00000580997 ZNF277Q9NRM2 450 aaPredicted RBP16.25■□□□□ 0.19
SENP3-204ENST00000580997 MBIPQ9NS73 344 aa16.25■□□□□ 0.19
SENP3-204ENST00000580997 CHPF2Q9P2E5 772 aa16.25■□□□□ 0.19
SENP3-204ENST00000580997 CACNA1SQ13698 1873 aa16.25■□□□□ 0.19
SENP3-204ENST00000580997 AIMP1Q12904 312 aaKnown RBP16.24■□□□□ 0.19
SENP3-204ENST00000580997 C3orf67Q6ZVT6 689 aa16.24■□□□□ 0.19
SENP3-204ENST00000580997 RBM17Q96I25 401 aaKnown RBP16.24■□□□□ 0.19
SENP3-204ENST00000580997 L3MBTL3Q96JM7 780 aaPredicted RBP16.24■□□□□ 0.19
SENP3-204ENST00000580997 IFT57Q9NWB7 429 aa16.24■□□□□ 0.19
SENP3-204ENST00000580997 DBF4Q9UBU7 674 aaPredicted RBP16.24■□□□□ 0.19
SENP3-204ENST00000580997 CALD1Q05682 793 aaKnown RBP16.23■□□□□ 0.19
SENP3-204ENST00000580997 DUSP27Q5VZP5 1158 aa16.23■□□□□ 0.19
SENP3-204ENST00000580997 SYNE4Q8N205 404 aa16.23■□□□□ 0.19
SENP3-204ENST00000580997 FZD9O00144 591 aa16.22■□□□□ 0.19
SENP3-204ENST00000580997 IARSP41252 1262 aaKnown RBP16.22■□□□□ 0.19
SENP3-204ENST00000580997 GNAI1P63096 354 aa16.22■□□□□ 0.19
SENP3-204ENST00000580997 ANKRD13DQ6ZTN6 518 aa16.22■□□□□ 0.19
SENP3-204ENST00000580997 PLBD2Q8NHP8 589 aa16.22■□□□□ 0.19
SENP3-204ENST00000580997 HYPKQ9NX55 129 aa16.22■□□□□ 0.19
SENP3-204ENST00000580997 PCNTO95613 3336 aa16.21■□□□□ 0.18
SENP3-204ENST00000580997 IQCA1LA6NCM1 817 aa16.2■□□□□ 0.18
SENP3-204ENST00000580997 HTRA3P83110 453 aa16.2■□□□□ 0.18
SENP3-204ENST00000580997 CCDC184Q52MB2 194 aa16.2■□□□□ 0.18
SENP3-204ENST00000580997 TRMT112Q9UI30 125 aaKnown RBP16.2■□□□□ 0.18
SENP3-204ENST00000580997 ZNF541Q9H0D2 1346 aa16.19■□□□□ 0.18
SENP3-204ENST00000580997 PPEF1O14829 653 aaPredicted RBP16.19■□□□□ 0.18
SENP3-204ENST00000580997 BBOX1O75936 387 aa16.19■□□□□ 0.18
SENP3-204ENST00000580997 TRIM28Q13263 835 aaKnown RBP16.19■□□□□ 0.18
SENP3-204ENST00000580997 PIP4P2Q8N4L2 257 aa16.19■□□□□ 0.18
SENP3-204ENST00000580997 KLRG1Q96E93 195 aa16.19■□□□□ 0.18
SENP3-204ENST00000580997 ISCA1Q9BUE6 129 aa16.19■□□□□ 0.18
SENP3-204ENST00000580997 ATP6V0A2Q9Y487 856 aa16.19■□□□□ 0.18
SENP3-204ENST00000580997 SH3TC1Q8TE82 1336 aa16.19■□□□□ 0.18
SENP3-204ENST00000580997 HCLS1P14317 486 aaPredicted RBP16.18■□□□□ 0.18
SENP3-204ENST00000580997 CHADLQ6NUI6 762 aa16.18■□□□□ 0.18
SENP3-204ENST00000580997 JDP2Q8WYK2 163 aa16.18■□□□□ 0.18
SENP3-204ENST00000580997 VPS33BQ9H267 617 aa16.18■□□□□ 0.18
SENP3-204ENST00000580997 TAF1DQ9H5J8 278 aaPredicted RBP16.18■□□□□ 0.18
SENP3-204ENST00000580997 ABCC4O15439 1325 aa16.18■□□□□ 0.18
SENP3-204ENST00000580997 POTEIP0CG38 1075 aa16.17■□□□□ 0.18
SENP3-204ENST00000580997 POTEJP0CG39 1038 aa16.17■□□□□ 0.18
SENP3-204ENST00000580997 CCDC27Q2M243 656 aa16.17■□□□□ 0.18
SENP3-204ENST00000580997 SLC51AQ86UW1 340 aa16.17■□□□□ 0.18
SENP3-204ENST00000580997 GPC2Q8N158 579 aa16.17■□□□□ 0.18
SENP3-204ENST00000580997 JMYQ8N9B5 988 aa16.17■□□□□ 0.18
SENP3-204ENST00000580997 ANKRD36CQ5JPF3 1778 aa16.17■□□□□ 0.18
SENP3-204ENST00000580997 SP8Q8IXZ3 490 aa16.16■□□□□ 0.18
SENP3-204ENST00000580997 C8orf58Q8NAV2 365 aa16.16■□□□□ 0.18
SENP3-204ENST00000580997 RTFDC1Q9BY42 306 aaPredicted RBP16.16■□□□□ 0.18
SENP3-204ENST00000580997 COL4A5P29400 1685 aa16.15■□□□□ 0.18
SENP3-204ENST00000580997 SCN4AP35499 1836 aa16.15■□□□□ 0.18
SENP3-204ENST00000580997 ZNF316A6NFI3 1004 aaPredicted RBP16.15■□□□□ 0.18
SENP3-204ENST00000580997 ELL2O00472 640 aaPredicted RBP16.15■□□□□ 0.18
SENP3-204ENST00000580997 TCERG1O14776 1098 aaKnown RBP16.15■□□□□ 0.18
SENP3-204ENST00000580997 DDX46Q7L014 1031 aaKnown RBP16.15■□□□□ 0.18
SENP3-204ENST00000580997 LDHDQ86WU2 507 aa16.15■□□□□ 0.18
SENP3-204ENST00000580997 CHMP4AQ9BY43 222 aa16.15■□□□□ 0.18
SENP3-204ENST00000580997 TMX4Q9H1E5 349 aaPredicted RBP16.15■□□□□ 0.18
SENP3-204ENST00000580997 HACL1Q9UJ83 578 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms