RNA–Protein interactions for RNA: ENST00000580014.1

RNF43-204, Transcript of ring finger protein 43, humanhuman

TSL 3

Gene RNF43, Length 497 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-204ENST00000580014 RIPK4P57078 832 aa9.38□□□□□ -0.91
RNF43-204ENST00000580014 QPCTQ16769 361 aa9.38□□□□□ -0.91
RNF43-204ENST00000580014 PRPF38BQ5VTL8 546 aaKnown RBP9.38□□□□□ -0.91
RNF43-204ENST00000580014 POTEAQ6S8J7 498 aa9.38□□□□□ -0.91
RNF43-204ENST00000580014 LAPTM4BQ86VI4 370 aa9.38□□□□□ -0.91
RNF43-204ENST00000580014 IFNL2Q8IZJ0 200 aa9.38□□□□□ -0.91
RNF43-204ENST00000580014 SNRKQ9NRH2 765 aa9.38□□□□□ -0.91
RNF43-204ENST00000580014 USP35Q9P2H5 1018 aa9.38□□□□□ -0.91
RNF43-204ENST00000580014 PCDHB15Q9Y5E8 787 aa9.38□□□□□ -0.91
RNF43-204ENST00000580014 BCL9O00512 1426 aa9.38□□□□□ -0.91
RNF43-204ENST00000580014 MAP3K5Q99683 1374 aa9.37□□□□□ -0.91
RNF43-204ENST00000580014 PCDH11XQ9BZA7 1347 aa9.37□□□□□ -0.91
RNF43-204ENST00000580014 PCDH11YQ9BZA8 1340 aa9.37□□□□□ -0.91
RNF43-204ENST00000580014 GNAT3A8MTJ3 354 aa9.37□□□□□ -0.91
RNF43-204ENST00000580014 APBB1O00213 710 aa9.37□□□□□ -0.91
RNF43-204ENST00000580014 HSP90AB1P08238 724 aaKnown RBP9.37□□□□□ -0.91
RNF43-204ENST00000580014 LMOD3Q0VAK6 560 aa9.37□□□□□ -0.91
RNF43-204ENST00000580014 ZNF530Q6P9A1 599 aaPredicted RBP9.37□□□□□ -0.91
RNF43-204ENST00000580014 WDR63Q8IWG1 891 aa9.37□□□□□ -0.91
RNF43-204ENST00000580014 WWC1Q8IX03 1113 aa9.37□□□□□ -0.91
RNF43-204ENST00000580014 SLF2Q8IX21 1173 aa9.37□□□□□ -0.91
RNF43-204ENST00000580014 IL17REQ8NFR9 667 aa9.37□□□□□ -0.91
RNF43-204ENST00000580014 MARVELD3Q96A59 401 aa9.37□□□□□ -0.91
RNF43-204ENST00000580014 POM121Q96HA1 1249 aa9.37□□□□□ -0.91
RNF43-204ENST00000580014 CCDC9Q9Y3X0 531 aaKnown RBP9.37□□□□□ -0.91
RNF43-204ENST00000580014 PARP4Q9UKK3 1724 aaKnown RBP9.36□□□□□ -0.91
RNF43-204ENST00000580014 IL16Q14005 1332 aa9.36□□□□□ -0.91
RNF43-204ENST00000580014 ZBED9Q6R2W3 1325 aa9.36□□□□□ -0.91
RNF43-204ENST00000580014 ADAMTS7Q9UKP4 1686 aa9.36□□□□□ -0.91
RNF43-204ENST00000580014 FAM205CA6NFA0 338 aa9.36□□□□□ -0.91
RNF43-204ENST00000580014 SOCS7O14512 581 aa9.36□□□□□ -0.91
RNF43-204ENST00000580014 FDX1P10109 184 aa9.36□□□□□ -0.91
RNF43-204ENST00000580014 RXRBP28702 533 aa9.36□□□□□ -0.91
RNF43-204ENST00000580014 DDB1Q16531 1140 aa9.36□□□□□ -0.91
RNF43-204ENST00000580014 SEPT12Q8IYM1 358 aa9.36□□□□□ -0.91
RNF43-204ENST00000580014 MARCH10Q8NA82 808 aaPredicted RBP9.36□□□□□ -0.91
RNF43-204ENST00000580014 DCAF5Q96JK2 942 aa9.36□□□□□ -0.91
RNF43-204ENST00000580014 NBPF3Q9H094 633 aa9.36□□□□□ -0.91
RNF43-204ENST00000580014 RRP7AQ9Y3A4 280 aaKnown RBP9.36□□□□□ -0.91
RNF43-204ENST00000580014 TK2O00142 265 aa9.35□□□□□ -0.91
RNF43-204ENST00000580014 KDM6AO15550 1401 aaPredicted RBP9.35□□□□□ -0.91
RNF43-204ENST00000580014 RNMTO43148 476 aaKnown RBP9.35□□□□□ -0.91
RNF43-204ENST00000580014 ZNF853P0CG23 659 aa9.35□□□□□ -0.91
RNF43-204ENST00000580014 HNRNPUQ00839 825 aaKnown RBP eCLIP9.35□□□□□ -0.91
RNF43-204ENST00000580014 RTL5Q5HYW3 569 aaPredicted RBP9.35□□□□□ -0.91
RNF43-204ENST00000580014 C1orf141Q5JVX7 400 aa9.35□□□□□ -0.91
RNF43-204ENST00000580014 TRMT2AQ8IZ69 625 aaKnown RBP9.35□□□□□ -0.91
RNF43-204ENST00000580014 ZBTB3Q9H5J0 574 aa9.35□□□□□ -0.91
RNF43-204ENST00000580014 COG6Q9Y2V7 657 aa9.35□□□□□ -0.91
RNF43-204ENST00000580014 WNK3Q9BYP7 1800 aa9.35□□□□□ -0.91
RNF43-204ENST00000580014 LRRC37A3O60309 1634 aa9.34□□□□□ -0.91
RNF43-204ENST00000580014 ERVV-2B6SEH9 535 aa9.34□□□□□ -0.91
RNF43-204ENST00000580014 BHMG1C9JSJ3 638 aaPredicted RBP9.34□□□□□ -0.91
RNF43-204ENST00000580014 PDE3BQ13370 1112 aa9.34□□□□□ -0.91
RNF43-204ENST00000580014 SAMD7Q7Z3H4 446 aa9.34□□□□□ -0.91
RNF43-204ENST00000580014 LGR6Q9HBX8 967 aa9.34□□□□□ -0.91
RNF43-204ENST00000580014 BABAM1Q9NWV8 329 aa9.34□□□□□ -0.91
RNF43-204ENST00000580014 MRC1P22897 1456 aa9.34□□□□□ -0.91
RNF43-204ENST00000580014 SHANK3Q9BYB0 1731 aa9.34□□□□□ -0.92
RNF43-204ENST00000580014 CALD1Q05682 793 aaKnown RBP9.33□□□□□ -0.92
RNF43-204ENST00000580014 MPRIPQ6WCQ1 1025 aa9.33□□□□□ -0.92
RNF43-204ENST00000580014 MTMR14Q8NCE2 650 aa9.33□□□□□ -0.92
RNF43-204ENST00000580014 DDX54Q8TDD1 881 aaKnown RBP9.33□□□□□ -0.92
RNF43-204ENST00000580014 CHL1O00533 1208 aa9.32□□□□□ -0.92
RNF43-204ENST00000580014 AP1G2O75843 785 aa9.32□□□□□ -0.92
RNF43-204ENST00000580014 SLFN5Q08AF3 891 aa9.32□□□□□ -0.92
RNF43-204ENST00000580014 DCTN1Q14203 1278 aa9.32□□□□□ -0.92
RNF43-204ENST00000580014 TAF7Q15545 349 aaPredicted RBP9.32□□□□□ -0.92
RNF43-204ENST00000580014 MCM10Q7L590 875 aa9.32□□□□□ -0.92
RNF43-204ENST00000580014 RTF1Q92541 710 aaKnown RBP9.32□□□□□ -0.92
RNF43-204ENST00000580014 HS3ST6Q96QI5 342 aa9.32□□□□□ -0.92
RNF43-204ENST00000580014 SLC52A2Q9HAB3 445 aa9.32□□□□□ -0.92
RNF43-204ENST00000580014 IFT57Q9NWB7 429 aa9.32□□□□□ -0.92
RNF43-204ENST00000580014 PCDHGC3Q9UN70 934 aa9.32□□□□□ -0.92
RNF43-204ENST00000580014 RGS12O14924 1447 aa9.31□□□□□ -0.92
RNF43-204ENST00000580014 CFHP08603 1231 aa9.31□□□□□ -0.92
RNF43-204ENST00000580014 GUCA2AQ02747 115 aa9.31□□□□□ -0.92
RNF43-204ENST00000580014 GRIPAP1Q4V328 841 aa9.31□□□□□ -0.92
RNF43-204ENST00000580014 KRT27Q7Z3Y8 459 aa9.31□□□□□ -0.92
RNF43-204ENST00000580014 THUMPD2Q9BTF0 503 aaKnown RBP9.31□□□□□ -0.92
RNF43-204ENST00000580014 E9PSI1 815 aa9.3□□□□□ -0.92
RNF43-204ENST00000580014 USP17L8P0C7I0 530 aa9.3□□□□□ -0.92
RNF43-204ENST00000580014 GNAI1P63096 354 aa9.3□□□□□ -0.92
RNF43-204ENST00000580014 MRPL50Q8N5N7 158 aaKnown RBP9.3□□□□□ -0.92
RNF43-204ENST00000580014 HLA-CQ95604 372 aa9.3□□□□□ -0.92
RNF43-204ENST00000580014 ZFRQ96KR1 1074 aaKnown RBP9.3□□□□□ -0.92
RNF43-204ENST00000580014 ARID3AQ99856 593 aa9.3□□□□□ -0.92
RNF43-204ENST00000580014 HEG1Q9ULI3 1381 aa9.29□□□□□ -0.92
RNF43-204ENST00000580014 SENP3-EIF4A1A0A087X0R7 540 aa9.29□□□□□ -0.92
RNF43-204ENST00000580014 POTEB3A0JP26 581 aa9.29□□□□□ -0.92
RNF43-204ENST00000580014 FUT2Q10981 343 aa9.29□□□□□ -0.92
RNF43-204ENST00000580014 MTMR2Q13614 643 aa9.29□□□□□ -0.92
RNF43-204ENST00000580014 DUSP27Q5VZP5 1158 aa9.29□□□□□ -0.92
RNF43-204ENST00000580014 POTEBQ6S5H4 581 aa9.29□□□□□ -0.92
RNF43-204ENST00000580014 FAM196AQ6ZSG2 479 aa9.29□□□□□ -0.92
RNF43-204ENST00000580014 NFATC2IPQ8NCF5 419 aa9.29□□□□□ -0.92
RNF43-204ENST00000580014 NECTIN2Q92692 538 aa9.29□□□□□ -0.92
RNF43-204ENST00000580014 FAM163AQ96GL9 167 aaPredicted RBP9.29□□□□□ -0.92
RNF43-204ENST00000580014 SALL2Q9Y467 1007 aaPredicted RBP9.29□□□□□ -0.92
RNF43-204ENST00000580014 RNF40O75150 1001 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms