RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 USP17L1Q7RTZ2 530 aa8.93□□□□□ -0.98
VPS53-217ENST00000575100 PCDH12Q9NPG4 1184 aa8.93□□□□□ -0.98
VPS53-217ENST00000575100 POGKQ9P215 609 aa8.93□□□□□ -0.98
VPS53-217ENST00000575100 H3BRB1 525 aa8.93□□□□□ -0.98
VPS53-217ENST00000575100 NDUFV2P19404 249 aa8.93□□□□□ -0.98
VPS53-217ENST00000575100 CTDSPL2Q05D32 466 aa8.93□□□□□ -0.98
VPS53-217ENST00000575100 LHX8Q68G74 356 aa8.93□□□□□ -0.98
VPS53-217ENST00000575100 TUT1Q9H6E5 874 aaKnown RBP8.93□□□□□ -0.98
VPS53-217ENST00000575100 CD46P15529 392 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 PTMSP20962 102 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 FANCCQ00597 558 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 GOLGA2Q08379 1002 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 ECM1Q16610 540 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 ZSCAN29Q8IWY8 852 aaPredicted RBP8.92□□□□□ -0.98
VPS53-217ENST00000575100 SEPT12Q8IYM1 358 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 GPATCH11Q8N954 259 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 NFATC2IPQ8NCF5 419 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 CCSER2Q9H7U1 834 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 THSD7AQ9UPZ6 1657 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 TNS1Q9HBL0 1735 aaKnown RBP8.92□□□□□ -0.98
VPS53-217ENST00000575100 PIK3CDO00329 1044 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 KIF3CO14782 793 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 ICMTO60725 284 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 PTK7Q13308 1070 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 OSBPL2Q9H1P3 480 aa8.92□□□□□ -0.98
VPS53-217ENST00000575100 MYOM1P52179 1685 aa8.91□□□□□ -0.98
VPS53-217ENST00000575100 ITSN1Q15811 1721 aa8.91□□□□□ -0.98
VPS53-217ENST00000575100 EP400Q96L91 3159 aa8.91□□□□□ -0.98
VPS53-217ENST00000575100 APLP1P51693 650 aa8.91□□□□□ -0.98
VPS53-217ENST00000575100 LONRF3Q496Y0 759 aa8.91□□□□□ -0.98
VPS53-217ENST00000575100 PPP1R18Q6NYC8 613 aa8.91□□□□□ -0.98
VPS53-217ENST00000575100 PLEKHM2Q8IWE5 1019 aa8.91□□□□□ -0.98
VPS53-217ENST00000575100 FAM200AQ8TCP9 573 aa8.91□□□□□ -0.98
VPS53-217ENST00000575100 MAF1Q9H063 256 aa8.91□□□□□ -0.98
VPS53-217ENST00000575100 METTL5Q9NRN9 209 aaKnown RBP8.91□□□□□ -0.98
VPS53-217ENST00000575100 MRPL42Q9Y6G3 142 aaKnown RBP8.91□□□□□ -0.98
VPS53-217ENST00000575100 EVI5O60447 810 aa8.9□□□□□ -0.98
VPS53-217ENST00000575100 DEFB132Q7Z7B7 95 aa8.9□□□□□ -0.98
VPS53-217ENST00000575100 RGL4Q8IZJ4 473 aa8.9□□□□□ -0.98
VPS53-217ENST00000575100 NAP1L5Q96NT1 182 aaPredicted RBP8.9□□□□□ -0.98
VPS53-217ENST00000575100 ACBD3Q9H3P7 528 aa8.9□□□□□ -0.98
VPS53-217ENST00000575100 IFT57Q9NWB7 429 aa8.9□□□□□ -0.98
VPS53-217ENST00000575100 SOGA3Q5TF21 947 aa8.9□□□□□ -0.99
VPS53-217ENST00000575100 KRT27Q7Z3Y8 459 aa8.9□□□□□ -0.99
VPS53-217ENST00000575100 CCDC146Q8IYE0 955 aa8.9□□□□□ -0.99
VPS53-217ENST00000575100 TMEM87AQ8NBN3 555 aa8.9□□□□□ -0.99
VPS53-217ENST00000575100 EPS8L1Q8TE68 723 aa8.9□□□□□ -0.99
VPS53-217ENST00000575100 STAG1Q8WVM7 1258 aa8.9□□□□□ -0.99
VPS53-217ENST00000575100 ANO8Q9HCE9 1232 aaPredicted RBP8.9□□□□□ -0.99
VPS53-217ENST00000575100 C2orf72A6NCS6 295 aa8.89□□□□□ -0.99
VPS53-217ENST00000575100 DISP2A7MBM2 1401 aa8.89□□□□□ -0.99
VPS53-217ENST00000575100 DNAJA1P31689 397 aaKnown RBP8.89□□□□□ -0.99
VPS53-217ENST00000575100 ZNF211Q13398 564 aaPredicted RBP8.89□□□□□ -0.99
VPS53-217ENST00000575100 SF3B2Q13435 895 aaKnown RBP8.89□□□□□ -0.99
VPS53-217ENST00000575100 SWI5Q1ZZU3 235 aa8.89□□□□□ -0.99
VPS53-217ENST00000575100 NUTM1Q86Y26 1132 aa8.89□□□□□ -0.99
VPS53-217ENST00000575100 CDK19Q9BWU1 502 aa8.89□□□□□ -0.99
VPS53-217ENST00000575100 PHRF1Q9P1Y6 1649 aaKnown RBP8.89□□□□□ -0.99
VPS53-217ENST00000575100 EVC2Q86UK5 1308 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 FAM83GA6ND36 823 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 MAP3K7O43318 606 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 ABL1P00519 1130 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 PAX3P23760 479 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 TNNI2P48788 182 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 TBX4P57082 545 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 BMS1Q14692 1282 aaKnown RBP8.88□□□□□ -0.99
VPS53-217ENST00000575100 C4orf46Q504U0 113 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 TSHZ1Q6ZSZ6 1077 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 GLYCTKQ8IVS8 523 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 SLC12A5Q9H2X9 1139 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 USP17L5A8MUK1 530 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 WASLO00401 505 aaPredicted RBP8.88□□□□□ -0.99
VPS53-217ENST00000575100 HOXA2O43364 376 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 CCAR1Q8IX12 1150 aaKnown RBP8.88□□□□□ -0.99
VPS53-217ENST00000575100 MICALL2Q8IY33 904 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 LRRN4Q8WUT4 740 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 RNF34Q969K3 372 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 ZBTB3Q9H5J0 574 aa8.88□□□□□ -0.99
VPS53-217ENST00000575100 TOPAZ1Q8N9V7 1692 aa8.87□□□□□ -0.99
VPS53-217ENST00000575100 PRR36Q9H6K5 1346 aa8.87□□□□□ -0.99
VPS53-217ENST00000575100 PER1O15534 1290 aaPredicted RBP8.87□□□□□ -0.99
VPS53-217ENST00000575100 P4HBP07237 508 aaKnown RBP8.87□□□□□ -0.99
VPS53-217ENST00000575100 ARHGAP4P98171 946 aa8.87□□□□□ -0.99
VPS53-217ENST00000575100 GNL2Q13823 731 aaKnown RBP8.87□□□□□ -0.99
VPS53-217ENST00000575100 PANK3Q9H999 370 aa8.87□□□□□ -0.99
VPS53-217ENST00000575100 PRKAR2AP13861 404 aaKnown RBP8.86□□□□□ -0.99
VPS53-217ENST00000575100 CNGB1Q14028 1251 aaPredicted RBP8.86□□□□□ -0.99
VPS53-217ENST00000575100 ZFYVE27Q5T4F4 411 aa8.86□□□□□ -0.99
VPS53-217ENST00000575100 TAS1R3Q7RTX0 852 aa8.86□□□□□ -0.99
VPS53-217ENST00000575100 FILIP1Q7Z7B0 1213 aa8.86□□□□□ -0.99
VPS53-217ENST00000575100 DDX56Q9NY93 547 aaKnown RBP8.86□□□□□ -0.99
VPS53-217ENST00000575100 RREB1Q92766 1687 aa8.86□□□□□ -0.99
VPS53-217ENST00000575100 SPATA31A5Q5VU36 1347 aa8.86□□□□□ -0.99
VPS53-217ENST00000575100 SPATA31A7Q8IWB4 1347 aa8.86□□□□□ -0.99
VPS53-217ENST00000575100 C21orf2O43822 256 aa8.86□□□□□ -0.99
VPS53-217ENST00000575100 BAG6P46379 1132 aa8.86□□□□□ -0.99
VPS53-217ENST00000575100 TMC1Q8TDI8 760 aa8.86□□□□□ -0.99
VPS53-217ENST00000575100 CARD14Q9BXL6 1004 aa8.86□□□□□ -0.99
VPS53-217ENST00000575100 ANO2Q9NQ90 1003 aa8.86□□□□□ -0.99
VPS53-217ENST00000575100 ATP7BP35670 1465 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms