RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.41□□□□□ -1.06
NUP88-206ENST00000573169 MYH14Q7Z406 1995 aaKnown RBP8.41□□□□□ -1.06
NUP88-206ENST00000573169 KIAA1551Q9HCM1 1747 aa8.4□□□□□ -1.06
NUP88-206ENST00000573169 ZNF831Q5JPB2 1677 aa8.4□□□□□ -1.06
NUP88-206ENST00000573169 C2orf72A6NCS6 295 aa8.4□□□□□ -1.06
NUP88-206ENST00000573169 DDR1Q08345 913 aa8.4□□□□□ -1.06
NUP88-206ENST00000573169 PDE3AQ14432 1141 aa8.4□□□□□ -1.06
NUP88-206ENST00000573169 SLC52A2Q9HAB3 445 aa8.4□□□□□ -1.06
NUP88-206ENST00000573169 BRPF3Q9ULD4 1205 aa8.4□□□□□ -1.06
NUP88-206ENST00000573169 BCS1LQ9Y276 419 aa8.4□□□□□ -1.06
NUP88-206ENST00000573169 N4BP2Q86UW6 1770 aaPredicted RBP8.4□□□□□ -1.07
NUP88-206ENST00000573169 SCN11AQ9UI33 1791 aa8.4□□□□□ -1.07
NUP88-206ENST00000573169 C10orf71Q711Q0 1435 aa8.39□□□□□ -1.07
NUP88-206ENST00000573169 ADCY9O60503 1353 aa8.39□□□□□ -1.07
NUP88-206ENST00000573169 USP42Q9H9J4 1324 aaKnown RBP8.39□□□□□ -1.07
NUP88-206ENST00000573169 U2SURPO15042 1029 aaKnown RBP8.39□□□□□ -1.07
NUP88-206ENST00000573169 PLIN1O60240 522 aa8.39□□□□□ -1.07
NUP88-206ENST00000573169 PPP2R1AP30153 589 aa8.39□□□□□ -1.07
NUP88-206ENST00000573169 DSG2Q14126 1118 aa8.39□□□□□ -1.07
NUP88-206ENST00000573169 C20orf194Q5TEA3 1177 aa8.39□□□□□ -1.07
NUP88-206ENST00000573169 CCDC87Q9NVE4 849 aa8.39□□□□□ -1.07
NUP88-206ENST00000573169 ADAMTS8Q9UP79 889 aa8.39□□□□□ -1.07
NUP88-206ENST00000573169 PARP3Q9Y6F1 533 aa8.39□□□□□ -1.07
NUP88-206ENST00000573169 C4AP0C0L4 1744 aa8.39□□□□□ -1.07
NUP88-206ENST00000573169 MAPK8IP3Q9UPT6 1336 aa8.38□□□□□ -1.07
NUP88-206ENST00000573169 FCHSD2O94868 740 aa8.38□□□□□ -1.07
NUP88-206ENST00000573169 CYP19A1P11511 503 aaPredicted RBP8.38□□□□□ -1.07
NUP88-206ENST00000573169 KCNA3P22001 575 aa8.38□□□□□ -1.07
NUP88-206ENST00000573169 TGFB2P61812 414 aa8.38□□□□□ -1.07
NUP88-206ENST00000573169 CAMK2BQ13554 666 aa8.38□□□□□ -1.07
NUP88-206ENST00000573169 USPL1Q5W0Q7 1092 aa8.38□□□□□ -1.07
NUP88-206ENST00000573169 ARHGAP27Q6ZUM4 889 aa8.38□□□□□ -1.07
NUP88-206ENST00000573169 PLPP6Q8IY26 295 aa8.38□□□□□ -1.07
NUP88-206ENST00000573169 GPBP1L1Q9HC44 474 aaPredicted RBP8.38□□□□□ -1.07
NUP88-206ENST00000573169 DAXXQ9UER7 740 aaPredicted RBP8.38□□□□□ -1.07
NUP88-206ENST00000573169 KCPQ6ZWJ8 1503 aa8.38□□□□□ -1.07
NUP88-206ENST00000573169 KIF13BQ9NQT8 1826 aa8.38□□□□□ -1.07
NUP88-206ENST00000573169 COL3A1P02461 1466 aaPredicted RBP8.38□□□□□ -1.07
NUP88-206ENST00000573169 SOS1Q07889 1333 aaPredicted RBP8.37□□□□□ -1.07
NUP88-206ENST00000573169 KIF3CO14782 793 aa8.37□□□□□ -1.07
NUP88-206ENST00000573169 TM4SF1P30408 202 aa8.37□□□□□ -1.07
NUP88-206ENST00000573169 CHRNA5P30532 468 aa8.37□□□□□ -1.07
NUP88-206ENST00000573169 IL17REQ8NFR9 667 aa8.37□□□□□ -1.07
NUP88-206ENST00000573169 ZBTB1Q9Y2K1 713 aa8.37□□□□□ -1.07
NUP88-206ENST00000573169 ARIH1Q9Y4X5 557 aaPredicted RBP8.37□□□□□ -1.07
NUP88-206ENST00000573169 VIRMAQ69YN4 1812 aaKnown RBP8.37□□□□□ -1.07
NUP88-206ENST00000573169 MRC1P22897 1456 aa8.37□□□□□ -1.07
NUP88-206ENST00000573169 ADAMTS7Q9UKP4 1686 aa8.37□□□□□ -1.07
NUP88-206ENST00000573169 E9PSI1 815 aa8.36□□□□□ -1.07
NUP88-206ENST00000573169 POLRMTO00411 1230 aaKnown RBP8.36□□□□□ -1.07
NUP88-206ENST00000573169 KCNQ3O43525 872 aa8.36□□□□□ -1.07
NUP88-206ENST00000573169 CANXP27824 592 aaKnown RBP8.36□□□□□ -1.07
NUP88-206ENST00000573169 PHACTR3Q96KR7 559 aa8.36□□□□□ -1.07
NUP88-206ENST00000573169 ANTXR1Q9H6X2 564 aa8.36□□□□□ -1.07
NUP88-206ENST00000573169 BCL2L12Q9HB09 334 aa8.36□□□□□ -1.07
NUP88-206ENST00000573169 ZPR1O75312 459 aa8.35□□□□□ -1.07
NUP88-206ENST00000573169 FRAT2O75474 233 aaPredicted RBP8.35□□□□□ -1.07
NUP88-206ENST00000573169 NFIXQ14938 502 aa8.35□□□□□ -1.07
NUP88-206ENST00000573169 L1TD1Q5T7N2 865 aaKnown RBP8.35□□□□□ -1.07
NUP88-206ENST00000573169 ZNF496Q96IT1 587 aaPredicted RBP8.35□□□□□ -1.07
NUP88-206ENST00000573169 NARFQ9UHQ1 456 aa8.35□□□□□ -1.07
NUP88-206ENST00000573169 COL15A1P39059 1388 aa8.35□□□□□ -1.07
NUP88-206ENST00000573169 GNAT3A8MTJ3 354 aa8.34□□□□□ -1.07
NUP88-206ENST00000573169 PRKAR2BP31323 418 aa8.34□□□□□ -1.07
NUP88-206ENST00000573169 TEFQ10587 303 aa8.34□□□□□ -1.07
NUP88-206ENST00000573169 BECN1Q14457 450 aa8.34□□□□□ -1.07
NUP88-206ENST00000573169 WDR43Q15061 677 aaKnown RBP eCLIP8.34□□□□□ -1.07
NUP88-206ENST00000573169 DALRD3Q5D0E6 543 aaKnown RBP8.34□□□□□ -1.07
NUP88-206ENST00000573169 C9orf131Q5VYM1 1079 aa8.34□□□□□ -1.07
NUP88-206ENST00000573169 SMYD5Q6GMV2 418 aa8.34□□□□□ -1.07
NUP88-206ENST00000573169 BICDL1Q6ZP65 573 aa8.34□□□□□ -1.07
NUP88-206ENST00000573169 PIM2Q9P1W9 311 aa8.34□□□□□ -1.07
NUP88-206ENST00000573169 FSD2A1L4K1 749 aa8.33□□□□□ -1.08
NUP88-206ENST00000573169 A1BGP04217 495 aa8.33□□□□□ -1.08
NUP88-206ENST00000573169 SERPINB2P05120 415 aa8.33□□□□□ -1.08
NUP88-206ENST00000573169 BRCA1P38398 1863 aaKnown RBP8.33□□□□□ -1.08
NUP88-206ENST00000573169 ZNF790Q6PG37 636 aa8.33□□□□□ -1.08
NUP88-206ENST00000573169 TTC5Q8N0Z6 440 aa8.33□□□□□ -1.08
NUP88-206ENST00000573169 CCDC24Q8N4L8 307 aa8.33□□□□□ -1.08
NUP88-206ENST00000573169 GAS2L2Q8NHY3 880 aa8.33□□□□□ -1.08
NUP88-206ENST00000573169 NMRK2Q9NPI5 230 aa8.33□□□□□ -1.08
NUP88-206ENST00000573169 ISY1Q9ULR0 285 aaKnown RBP8.33□□□□□ -1.08
NUP88-206ENST00000573169 ZNF330Q9Y3S2 320 aaPredicted RBP8.33□□□□□ -1.08
NUP88-206ENST00000573169 UBR2Q8IWV8 1755 aa8.33□□□□□ -1.08
NUP88-206ENST00000573169 PRAMEF22A3QJZ6 481 aa8.32□□□□□ -1.08
NUP88-206ENST00000573169 SPDYE16A6NNV3 312 aaPredicted RBP8.32□□□□□ -1.08
NUP88-206ENST00000573169 U2AF1L5P0DN76 240 aaPredicted RBP8.32□□□□□ -1.08
NUP88-206ENST00000573169 PIP4K2AP48426 406 aaPredicted RBP8.32□□□□□ -1.08
NUP88-206ENST00000573169 EIF5P55010 431 aaKnown RBP8.32□□□□□ -1.08
NUP88-206ENST00000573169 U2AF1Q01081 240 aaKnown RBP eCLIP8.32□□□□□ -1.08
NUP88-206ENST00000573169 DCTN1Q14203 1278 aa8.32□□□□□ -1.08
NUP88-206ENST00000573169 SKAP1Q86WV1 359 aa8.32□□□□□ -1.08
NUP88-206ENST00000573169 TBC1D2BQ9UPU7 963 aa8.32□□□□□ -1.08
NUP88-206ENST00000573169 CARMIL3Q8ND23 1372 aa8.32□□□□□ -1.08
NUP88-206ENST00000573169 HEG1Q9ULI3 1381 aa8.32□□□□□ -1.08
NUP88-206ENST00000573169 BTBD11A6QL63 1104 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 TBC1D12O60347 775 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 STARD3NLO95772 234 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 HSPA6P17066 643 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 SLC4A3P48751 1232 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms