RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 GTF2F1P35269 517 aaKnown RBP eCLIP12.77□□□□□ -0.36
CCDC40-207ENST00000572253 NMIQ13287 307 aaPredicted RBP12.77□□□□□ -0.36
CCDC40-207ENST00000572253 FERMT3Q86UX7 667 aa12.77□□□□□ -0.36
CCDC40-207ENST00000572253 THEMISQ8N1K5 641 aaPredicted RBP12.77□□□□□ -0.36
CCDC40-207ENST00000572253 C17orf53Q8N3J3 647 aaPredicted RBP12.77□□□□□ -0.36
CCDC40-207ENST00000572253 DDX54Q8TDD1 881 aaKnown RBP12.77□□□□□ -0.36
CCDC40-207ENST00000572253 DDX19AQ9NUU7 478 aaKnown RBP12.77□□□□□ -0.36
CCDC40-207ENST00000572253 ADCY9O60503 1353 aa12.77□□□□□ -0.36
CCDC40-207ENST00000572253 SPATA32Q96LK8 384 aa12.77□□□□□ -0.37
CCDC40-207ENST00000572253 NWD1Q149M9 1564 aa12.77□□□□□ -0.37
CCDC40-207ENST00000572253 AMOTQ4VCS5 1084 aa12.77□□□□□ -0.37
CCDC40-207ENST00000572253 KIAA1524Q8TCG1 905 aa12.77□□□□□ -0.37
CCDC40-207ENST00000572253 MAP4K1Q92918 833 aa12.77□□□□□ -0.37
CCDC40-207ENST00000572253 HMG20BQ9P0W2 317 aa12.77□□□□□ -0.37
CCDC40-207ENST00000572253 SLC27A2O14975 620 aa12.76□□□□□ -0.37
CCDC40-207ENST00000572253 TYRO3Q06418 890 aa12.76□□□□□ -0.37
CCDC40-207ENST00000572253 TPCN1Q9ULQ1 816 aa12.76□□□□□ -0.37
CCDC40-207ENST00000572253 KCNQ3O43525 872 aa12.76□□□□□ -0.37
CCDC40-207ENST00000572253 TTC6Q86TZ1 520 aa12.76□□□□□ -0.37
CCDC40-207ENST00000572253 NPHP3Q7Z494 1330 aa12.76□□□□□ -0.37
CCDC40-207ENST00000572253 NBPF6Q5VWK0 638 aa12.76□□□□□ -0.37
CCDC40-207ENST00000572253 LINS1Q8NG48 757 aa12.76□□□□□ -0.37
CCDC40-207ENST00000572253 NBPF4Q96M43 638 aa12.76□□□□□ -0.37
CCDC40-207ENST00000572253 KRT32Q14532 448 aa12.75□□□□□ -0.37
CCDC40-207ENST00000572253 MPRIPQ6WCQ1 1025 aa12.75□□□□□ -0.37
CCDC40-207ENST00000572253 KCNH5Q8NCM2 988 aa12.75□□□□□ -0.37
CCDC40-207ENST00000572253 FAM227BQ96M60 508 aa12.75□□□□□ -0.37
CCDC40-207ENST00000572253 PHF8Q9UPP1 1060 aa12.75□□□□□ -0.37
CCDC40-207ENST00000572253 GRM8O00222 908 aa12.75□□□□□ -0.37
CCDC40-207ENST00000572253 CEBPAP49715 358 aaPredicted RBP12.75□□□□□ -0.37
CCDC40-207ENST00000572253 CAMK4Q16566 473 aa12.75□□□□□ -0.37
CCDC40-207ENST00000572253 CDC37L1Q7L3B6 337 aa12.75□□□□□ -0.37
CCDC40-207ENST00000572253 CCDC8Q9H0W5 538 aaPredicted RBP12.75□□□□□ -0.37
CCDC40-207ENST00000572253 BICD2Q8TD16 824 aa12.75□□□□□ -0.37
CCDC40-207ENST00000572253 RPS6KB1P23443 525 aa12.74□□□□□ -0.37
CCDC40-207ENST00000572253 BOLA2Q9H3K6 86 aa12.74□□□□□ -0.37
CCDC40-207ENST00000572253 DACT1Q9NYF0 836 aa12.74□□□□□ -0.37
CCDC40-207ENST00000572253 NEXNQ0ZGT2 675 aa12.74□□□□□ -0.37
CCDC40-207ENST00000572253 CWF19L2Q2TBE0 894 aaKnown RBP12.74□□□□□ -0.37
CCDC40-207ENST00000572253 TRIM5Q9C035 493 aa12.74□□□□□ -0.37
CCDC40-207ENST00000572253 ADGRL3Q9HAR2 1447 aa12.74□□□□□ -0.37
CCDC40-207ENST00000572253 H3BQV1 296 aa12.73□□□□□ -0.37
CCDC40-207ENST00000572253 RNMTO43148 476 aaKnown RBP12.73□□□□□ -0.37
CCDC40-207ENST00000572253 IFFO2Q5TF58 517 aa12.73□□□□□ -0.37
CCDC40-207ENST00000572253 PYCARDQ9ULZ3 195 aa12.73□□□□□ -0.37
CCDC40-207ENST00000572253 LIG1P18858 919 aa12.73□□□□□ -0.37
CCDC40-207ENST00000572253 ST3GAL1Q11201 340 aa12.73□□□□□ -0.37
CCDC40-207ENST00000572253 CKAP2LQ8IYA6 745 aa12.73□□□□□ -0.37
CCDC40-207ENST00000572253 ALDH8A1Q9H2A2 487 aaPredicted RBP12.73□□□□□ -0.37
CCDC40-207ENST00000572253 DTNBO60941 627 aa12.73□□□□□ -0.37
CCDC40-207ENST00000572253 EAF2Q96CJ1 260 aaPredicted RBP12.73□□□□□ -0.37
CCDC40-207ENST00000572253 MRVI1Q9Y6F6 885 aa12.73□□□□□ -0.37
CCDC40-207ENST00000572253 GIGYF1O75420 1035 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-207ENST00000572253 CAVIN2O95810 425 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 HSP90B1P14625 803 aaKnown RBP12.72□□□□□ -0.37
CCDC40-207ENST00000572253 KCNA6P17658 529 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 ANO6Q4KMQ2 910 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 RIC3Q7Z5B4 369 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 SUCLG2Q96I99 432 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 RGPD8O14715 1765 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-207ENST00000572253 CRYBG1Q9Y4K1 1723 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 FGD1P98174 961 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 PSME1Q06323 249 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 STK3Q13188 491 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 SIL1Q9H173 461 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 CLSTN2Q9H4D0 955 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 BICC1Q9H694 974 aaKnown RBP12.72□□□□□ -0.37
CCDC40-207ENST00000572253 TFIP11Q9UBB9 837 aaKnown RBP12.72□□□□□ -0.37
CCDC40-207ENST00000572253 PTGS1P23219 599 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 AIMP1Q12904 312 aaKnown RBP12.72□□□□□ -0.37
CCDC40-207ENST00000572253 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-207ENST00000572253 LUZP1Q86V48 1076 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 LEO1Q8WVC0 666 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-207ENST00000572253 TSC1Q92574 1164 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 TCEANC2Q96MN5 208 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 KCNF1Q9H3M0 494 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 SNRKQ9NRH2 765 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 SLIT1O75093 1534 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 NCAPD2Q15021 1401 aa12.72□□□□□ -0.37
CCDC40-207ENST00000572253 A0A0D9SFI3 127 aa12.71□□□□□ -0.37
CCDC40-207ENST00000572253 AP5Z1O43299 807 aa12.71□□□□□ -0.37
CCDC40-207ENST00000572253 FAM173BQ6P4H8 233 aa12.71□□□□□ -0.37
CCDC40-207ENST00000572253 LARP1Q6PKG0 1096 aaKnown RBP12.71□□□□□ -0.37
CCDC40-207ENST00000572253 PDCL2Q8N4E4 241 aa12.71□□□□□ -0.37
CCDC40-207ENST00000572253 ARHGAP23Q9P227 1491 aa12.71□□□□□ -0.37
CCDC40-207ENST00000572253 SASH1O94885 1247 aa12.71□□□□□ -0.37
CCDC40-207ENST00000572253 BCL2L12Q9HB09 334 aa12.71□□□□□ -0.37
CCDC40-207ENST00000572253 CBX8Q9HC52 389 aa12.71□□□□□ -0.37
CCDC40-207ENST00000572253 CFAP45Q9UL16 551 aa12.71□□□□□ -0.37
CCDC40-207ENST00000572253 GOLGA6L19H0YKK7 550 aa12.71□□□□□ -0.38
CCDC40-207ENST00000572253 CCDC186Q7Z3E2 898 aa12.71□□□□□ -0.38
CCDC40-207ENST00000572253 RIOK3O14730 519 aaKnown RBP12.71□□□□□ -0.38
CCDC40-207ENST00000572253 MED1Q15648 1581 aaPredicted RBP12.71□□□□□ -0.38
CCDC40-207ENST00000572253 PROSER3Q2NL68 480 aa12.71□□□□□ -0.38
CCDC40-207ENST00000572253 DDX21Q9NR30 783 aaKnown RBP eCLIP12.71□□□□□ -0.38
CCDC40-207ENST00000572253 ZNF165P49910 485 aa12.7□□□□□ -0.38
CCDC40-207ENST00000572253 PPP4R3BQ5MIZ7 849 aa12.7□□□□□ -0.38
CCDC40-207ENST00000572253 LRRC59Q96AG4 307 aaKnown RBP12.7□□□□□ -0.38
CCDC40-207ENST00000572253 ZSCAN16Q9H4T2 348 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-207ENST00000572253 U3KPZ7 1027 aaPredicted RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms