RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 SUSD4Q5VX71 490 aa25.5■■□□□ 1.67
NUP88-203ENST00000572019 GPC2Q8N158 579 aa25.5■■□□□ 1.67
NUP88-203ENST00000572019 PSMD1Q99460 953 aa25.5■■□□□ 1.67
NUP88-203ENST00000572019 ZBTB3Q9H5J0 574 aa25.5■■□□□ 1.67
NUP88-203ENST00000572019 ERVV-1B6SEH8 477 aa25.49■■□□□ 1.67
NUP88-203ENST00000572019 WBP1LQ9NX94 342 aa25.49■■□□□ 1.67
NUP88-203ENST00000572019 GJA3Q9Y6H8 435 aa25.49■■□□□ 1.67
NUP88-203ENST00000572019 RIC1Q4ADV7 1423 aa25.48■■□□□ 1.67
NUP88-203ENST00000572019 TCERG1O14776 1098 aaKnown RBP25.48■■□□□ 1.67
NUP88-203ENST00000572019 PLEKHF1Q96S99 279 aa25.48■■□□□ 1.67
NUP88-203ENST00000572019 PRDM10Q9NQV6 1147 aa25.48■■□□□ 1.67
NUP88-203ENST00000572019 LAMB2P55268 1798 aa25.48■■□□□ 1.67
NUP88-203ENST00000572019 TRPM7Q96QT4 1865 aa25.47■■□□□ 1.67
NUP88-203ENST00000572019 RASSF10A6NK89 507 aa25.47■■□□□ 1.67
NUP88-203ENST00000572019 HOXA10P31260 410 aaPredicted RBP25.47■■□□□ 1.67
NUP88-203ENST00000572019 SCNN1DP51172 638 aa25.47■■□□□ 1.67
NUP88-203ENST00000572019 LBX1P52954 281 aa25.47■■□□□ 1.67
NUP88-203ENST00000572019 PNMA8AQ86V59 439 aaPredicted RBP25.47■■□□□ 1.67
NUP88-203ENST00000572019 NYXQ9GZU5 481 aa25.47■■□□□ 1.67
NUP88-203ENST00000572019 EPS15P42566 896 aa25.46■■□□□ 1.67
NUP88-203ENST00000572019 CTCFP49711 727 aaPredicted RBP25.46■■□□□ 1.67
NUP88-203ENST00000572019 TAF1P21675 1872 aa25.45■■□□□ 1.67
NUP88-203ENST00000572019 NTSR2O95665 410 aa25.45■■□□□ 1.66
NUP88-203ENST00000572019 ZNF34Q8IZ26 560 aa25.45■■□□□ 1.66
NUP88-203ENST00000572019 JDP2Q8WYK2 163 aa25.45■■□□□ 1.66
NUP88-203ENST00000572019 RPGRQ92834 1020 aaKnown RBP25.45■■□□□ 1.66
NUP88-203ENST00000572019 THSD7BQ9C0I4 1608 aa25.45■■□□□ 1.66
NUP88-203ENST00000572019 IBTKQ9P2D0 1353 aaPredicted RBP25.44■■□□□ 1.66
NUP88-203ENST00000572019 DEFB115Q30KQ5 88 aa25.44■■□□□ 1.66
NUP88-203ENST00000572019 KIF6Q6ZMV9 814 aa25.44■■□□□ 1.66
NUP88-203ENST00000572019 AIDAQ96BJ3 306 aa25.44■■□□□ 1.66
NUP88-203ENST00000572019 HSPA8P11142 646 aaKnown RBP25.43■■□□□ 1.66
NUP88-203ENST00000572019 LRP10Q7Z4F1 713 aa25.43■■□□□ 1.66
NUP88-203ENST00000572019 DDX21Q9NR30 783 aaKnown RBP eCLIP25.43■■□□□ 1.66
NUP88-203ENST00000572019 WDR33Q9C0J8 1336 aaKnown RBP25.42■■□□□ 1.66
NUP88-203ENST00000572019 TRAF5O00463 557 aa25.42■■□□□ 1.66
NUP88-203ENST00000572019 PPEF1O14829 653 aaPredicted RBP25.42■■□□□ 1.66
NUP88-203ENST00000572019 EIF6P56537 245 aaKnown RBP25.42■■□□□ 1.66
NUP88-203ENST00000572019 NFE2L2Q16236 605 aa25.42■■□□□ 1.66
NUP88-203ENST00000572019 LARGE2Q8N3Y3 721 aa25.42■■□□□ 1.66
NUP88-203ENST00000572019 ABT1Q9ULW3 272 aaKnown RBP25.42■■□□□ 1.66
NUP88-203ENST00000572019 ANKRD36CQ5JPF3 1778 aa25.41■■□□□ 1.66
NUP88-203ENST00000572019 ANXA1P04083 346 aa25.41■■□□□ 1.66
NUP88-203ENST00000572019 PROSER3Q2NL68 480 aa25.41■■□□□ 1.66
NUP88-203ENST00000572019 CC2D2BQ6DHV5 1058 aa25.41■■□□□ 1.66
NUP88-203ENST00000572019 PNISRQ8TF01 805 aaKnown RBP25.41■■□□□ 1.66
NUP88-203ENST00000572019 GIGYF2Q6Y7W6 1299 aaKnown RBP25.4■■□□□ 1.66
NUP88-203ENST00000572019 CRAMP1Q96RY5 1269 aa25.4■■□□□ 1.66
NUP88-203ENST00000572019 PDIA6Q15084 440 aa25.39■■□□□ 1.66
NUP88-203ENST00000572019 CST9Q5W186 159 aa25.39■■□□□ 1.66
NUP88-203ENST00000572019 AOC3Q16853 763 aa25.38■■□□□ 1.65
NUP88-203ENST00000572019 RBM17Q96I25 401 aaKnown RBP25.38■■□□□ 1.65
NUP88-203ENST00000572019 LMOD1P29536 600 aaPredicted RBP25.37■■□□□ 1.65
NUP88-203ENST00000572019 PPIP5K2O43314 1243 aa25.36■■□□□ 1.65
NUP88-203ENST00000572019 ABCC4O15439 1325 aa25.36■■□□□ 1.65
NUP88-203ENST00000572019 CYP4F22Q6NT55 531 aa25.35■■□□□ 1.65
NUP88-203ENST00000572019 NIM1KQ8IY84 436 aa25.35■■□□□ 1.65
NUP88-203ENST00000572019 EIF2S2P20042 333 aaKnown RBP25.34■■□□□ 1.65
NUP88-203ENST00000572019 GRM1Q13255 1194 aa25.34■■□□□ 1.65
NUP88-203ENST00000572019 ZNF428Q96B54 188 aa25.34■■□□□ 1.65
NUP88-203ENST00000572019 CAPNS2Q96L46 248 aa25.34■■□□□ 1.65
NUP88-203ENST00000572019 ATP6V0A2Q9Y487 856 aa25.34■■□□□ 1.65
NUP88-203ENST00000572019 CXCL9Q07325 125 aa25.33■■□□□ 1.65
NUP88-203ENST00000572019 GPRC5DQ9NZD1 345 aa25.33■■□□□ 1.65
NUP88-203ENST00000572019 TSPYL4Q9UJ04 414 aa25.33■■□□□ 1.65
NUP88-203ENST00000572019 ERBB4Q15303 1308 aa25.33■■□□□ 1.64
NUP88-203ENST00000572019 NEFMP07197 916 aa25.32■■□□□ 1.64
NUP88-203ENST00000572019 SLC10A5Q5PT55 438 aa25.32■■□□□ 1.64
NUP88-203ENST00000572019 PAXIP1Q6ZW49 1069 aaPredicted RBP25.32■■□□□ 1.64
NUP88-203ENST00000572019 USP50Q70EL3 339 aaPredicted RBP25.32■■□□□ 1.64
NUP88-203ENST00000572019 PPP1R42Q7Z4L9 355 aa25.32■■□□□ 1.64
NUP88-203ENST00000572019 ABHD8Q96I13 439 aa25.32■■□□□ 1.64
NUP88-203ENST00000572019 COL4A1P02462 1669 aa25.32■■□□□ 1.64
NUP88-203ENST00000572019 DUOX1Q9NRD9 1551 aa25.31■■□□□ 1.64
NUP88-203ENST00000572019 MAP2K1Q02750 393 aaPredicted RBP25.31■■□□□ 1.64
NUP88-203ENST00000572019 NECTIN2Q92692 538 aa25.31■■□□□ 1.64
NUP88-203ENST00000572019 NLRP3Q96P20 1036 aa25.31■■□□□ 1.64
NUP88-203ENST00000572019 UTP14AQ9BVJ6 771 aaKnown RBP25.31■■□□□ 1.64
NUP88-203ENST00000572019 TSKSQ9UJT2 592 aa25.31■■□□□ 1.64
NUP88-203ENST00000572019 DDX60Q8IY21 1712 aaKnown RBP25.3■■□□□ 1.64
NUP88-203ENST00000572019 SHTN1A0MZ66 631 aa25.3■■□□□ 1.64
NUP88-203ENST00000572019 AOC2O75106 756 aa25.3■■□□□ 1.64
NUP88-203ENST00000572019 HCLS1P14317 486 aaPredicted RBP25.3■■□□□ 1.64
NUP88-203ENST00000572019 GRIPAP1Q4V328 841 aa25.3■■□□□ 1.64
NUP88-203ENST00000572019 PARP10Q53GL7 1025 aa25.3■■□□□ 1.64
NUP88-203ENST00000572019 GMPSP49915 693 aaPredicted RBP25.29■■□□□ 1.64
NUP88-203ENST00000572019 RTFDC1Q9BY42 306 aaPredicted RBP25.29■■□□□ 1.64
NUP88-203ENST00000572019 TLL2Q9Y6L7 1015 aa25.29■■□□□ 1.64
NUP88-203ENST00000572019 MAPK8IP3Q9UPT6 1336 aa25.29■■□□□ 1.64
NUP88-203ENST00000572019 CASP8AP2Q9UKL3 1982 aa25.28■■□□□ 1.64
NUP88-203ENST00000572019 KRT24Q2M2I5 525 aa25.28■■□□□ 1.64
NUP88-203ENST00000572019 GPR101Q96P66 508 aaPredicted RBP25.28■■□□□ 1.64
NUP88-203ENST00000572019 GLIS2Q9BZE0 524 aaPredicted RBP25.28■■□□□ 1.64
NUP88-203ENST00000572019 ADARB2Q9NS39 739 aaKnown RBP25.28■■□□□ 1.64
NUP88-203ENST00000572019 ZNRF3Q9ULT6 936 aa25.28■■□□□ 1.64
NUP88-203ENST00000572019 LRRC37AA6NMS7 1700 aa25.27■■□□□ 1.64
NUP88-203ENST00000572019 HIRAP54198 1017 aaPredicted RBP25.27■■□□□ 1.64
NUP88-203ENST00000572019 NLRP10Q86W26 655 aa25.27■■□□□ 1.64
NUP88-203ENST00000572019 POLR2AP24928 1970 aaKnown RBP25.27■■□□□ 1.64
NUP88-203ENST00000572019 AIMP1Q12904 312 aaKnown RBP25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms