RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 C1orf229Q6ZS94 237 aaPredicted RBP7.79□□□□□ -1.16
NUP88-202ENST00000570937 IFT43Q96FT9 208 aa7.79□□□□□ -1.16
NUP88-202ENST00000570937 EFCC1Q9HA90 598 aa7.79□□□□□ -1.16
NUP88-202ENST00000570937 C11orf16Q9NQ32 467 aa7.79□□□□□ -1.16
NUP88-202ENST00000570937 KLF15Q9UIH9 416 aa7.79□□□□□ -1.16
NUP88-202ENST00000570937 ADAMTS8Q9UP79 889 aa7.79□□□□□ -1.16
NUP88-202ENST00000570937 MICAL2O94851 1124 aa7.78□□□□□ -1.16
NUP88-202ENST00000570937 IDH3AP50213 366 aa7.78□□□□□ -1.16
NUP88-202ENST00000570937 SPEM2Q0P670 501 aa7.78□□□□□ -1.16
NUP88-202ENST00000570937 EDARADDQ8WWZ3 215 aa7.78□□□□□ -1.16
NUP88-202ENST00000570937 SLC30A3Q99726 388 aa7.78□□□□□ -1.16
NUP88-202ENST00000570937 PRR12Q9ULL5 1215 aa7.78□□□□□ -1.16
NUP88-202ENST00000570937 NEURL1BA8MQ27 555 aa7.77□□□□□ -1.17
NUP88-202ENST00000570937 TNFRSF10BO14763 440 aa7.77□□□□□ -1.17
NUP88-202ENST00000570937 EPXP11678 715 aa7.77□□□□□ -1.17
NUP88-202ENST00000570937 EPB42P16452 691 aa7.77□□□□□ -1.17
NUP88-202ENST00000570937 BRD2P25440 801 aaKnown RBP7.77□□□□□ -1.17
NUP88-202ENST00000570937 GRNP28799 593 aaKnown RBP7.77□□□□□ -1.17
NUP88-202ENST00000570937 ARSDP51689 593 aa7.77□□□□□ -1.17
NUP88-202ENST00000570937 NAA30Q147X3 362 aaPredicted RBP7.77□□□□□ -1.17
NUP88-202ENST00000570937 PHLDB3Q6NSJ2 640 aa7.77□□□□□ -1.17
NUP88-202ENST00000570937 GALNT6Q8NCL4 622 aa7.77□□□□□ -1.17
NUP88-202ENST00000570937 MDFIQ99750 246 aa7.77□□□□□ -1.17
NUP88-202ENST00000570937 DNMT3AQ9Y6K1 912 aaPredicted RBP7.77□□□□□ -1.17
NUP88-202ENST00000570937 CARNS1A5YM72 827 aa7.76□□□□□ -1.17
NUP88-202ENST00000570937 OPLAHO14841 1288 aa7.76□□□□□ -1.17
NUP88-202ENST00000570937 SIN3BO75182 1162 aa7.76□□□□□ -1.17
NUP88-202ENST00000570937 SUZ12Q15022 739 aaKnown RBP7.76□□□□□ -1.17
NUP88-202ENST00000570937 SYT9Q86SS6 491 aa7.76□□□□□ -1.17
NUP88-202ENST00000570937 FCHSD1Q86WN1 690 aa7.76□□□□□ -1.17
NUP88-202ENST00000570937 TREML1Q86YW5 311 aa7.76□□□□□ -1.17
NUP88-202ENST00000570937 ETFBKMTQ8IXQ9 262 aa7.76□□□□□ -1.17
NUP88-202ENST00000570937 GSX2Q9BZM3 304 aa7.76□□□□□ -1.17
NUP88-202ENST00000570937 SEPT3Q9UH03 358 aa7.76□□□□□ -1.17
NUP88-202ENST00000570937 SHISA8B8ZZ34 492 aa7.75□□□□□ -1.17
NUP88-202ENST00000570937 PCBP4P57723 403 aaKnown RBP7.75□□□□□ -1.17
NUP88-202ENST00000570937 PDE4CQ08493 712 aa7.75□□□□□ -1.17
NUP88-202ENST00000570937 NEUROD1Q13562 356 aa7.75□□□□□ -1.17
NUP88-202ENST00000570937 RETREG2Q8NC44 543 aa7.75□□□□□ -1.17
NUP88-202ENST00000570937 TNFRSF25Q93038 417 aa7.75□□□□□ -1.17
NUP88-202ENST00000570937 ADARB2-AS1A8MUL3 147 aa7.74□□□□□ -1.17
NUP88-202ENST00000570937 FAM26DQ5JW98 314 aa7.74□□□□□ -1.17
NUP88-202ENST00000570937 NEDD1Q8NHV4 660 aa7.74□□□□□ -1.17
NUP88-202ENST00000570937 STIM2Q9P246 746 aa7.74□□□□□ -1.17
NUP88-202ENST00000570937 SCNN1AP37088 669 aa7.73□□□□□ -1.17
NUP88-202ENST00000570937 CCINQ13939 588 aa7.73□□□□□ -1.17
NUP88-202ENST00000570937 B4GALNT3Q6L9W6 998 aa7.73□□□□□ -1.17
NUP88-202ENST00000570937 HELQQ8TDG4 1101 aa7.73□□□□□ -1.17
NUP88-202ENST00000570937 BTBD6Q96KE9 485 aa7.73□□□□□ -1.17
NUP88-202ENST00000570937 ELOA3CA0A087WX78 387 aaPredicted RBP7.72□□□□□ -1.17
NUP88-202ENST00000570937 ELOA3DA6NLF2 546 aaPredicted RBP7.72□□□□□ -1.17
NUP88-202ENST00000570937 EGFRP00533 1210 aa7.72□□□□□ -1.17
NUP88-202ENST00000570937 MARSP56192 900 aaKnown RBP7.72□□□□□ -1.17
NUP88-202ENST00000570937 ELOA3BQ3SY89 546 aa7.72□□□□□ -1.17
NUP88-202ENST00000570937 ABTB2Q8N961 1025 aa7.72□□□□□ -1.17
NUP88-202ENST00000570937 ELOA3Q8NG57 546 aa7.72□□□□□ -1.17
NUP88-202ENST00000570937 RTCBQ9Y3I0 505 aaKnown RBP7.72□□□□□ -1.17
NUP88-202ENST00000570937 HOXB4P17483 251 aaPredicted RBP7.71□□□□□ -1.18
NUP88-202ENST00000570937 KCNMA1Q12791 1236 aa7.71□□□□□ -1.18
NUP88-202ENST00000570937 RAB44Q7Z6P3 723 aaPredicted RBP7.71□□□□□ -1.18
NUP88-202ENST00000570937 BHMTQ93088 406 aa7.71□□□□□ -1.18
NUP88-202ENST00000570937 SCARF2Q96GP6 870 aaPredicted RBP7.71□□□□□ -1.18
NUP88-202ENST00000570937 FAM13BQ9NYF5 915 aa7.71□□□□□ -1.18
NUP88-202ENST00000570937 MTMR7Q9Y216 660 aa7.71□□□□□ -1.18
NUP88-202ENST00000570937 RNF225M0QZC1 329 aaPredicted RBP7.7□□□□□ -1.18
NUP88-202ENST00000570937 CHSY3Q70JA7 882 aa7.7□□□□□ -1.18
NUP88-202ENST00000570937 GTF3C2Q8WUA4 911 aaPredicted RBP7.7□□□□□ -1.18
NUP88-202ENST00000570937 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.7□□□□□ -1.18
NUP88-202ENST00000570937 KCNMB2Q9Y691 235 aa7.7□□□□□ -1.18
NUP88-202ENST00000570937 ZBTB39O15060 712 aa7.69□□□□□ -1.18
NUP88-202ENST00000570937 MAP3K6O95382 1288 aa7.69□□□□□ -1.18
NUP88-202ENST00000570937 NPR3P17342 541 aa7.69□□□□□ -1.18
NUP88-202ENST00000570937 ZAP70P43403 619 aa7.69□□□□□ -1.18
NUP88-202ENST00000570937 RGL4Q8IZJ4 473 aa7.69□□□□□ -1.18
NUP88-202ENST00000570937 PNMA5Q96PV4 448 aa7.69□□□□□ -1.18
NUP88-202ENST00000570937 USP20Q9Y2K6 914 aa7.69□□□□□ -1.18
NUP88-202ENST00000570937 CCDC180Q9P1Z9 1646 aa7.68□□□□□ -1.18
NUP88-202ENST00000570937 NFKB1P19838 968 aa7.68□□□□□ -1.18
NUP88-202ENST00000570937 ALAS2P22557 587 aa7.68□□□□□ -1.18
NUP88-202ENST00000570937 DGKGP49619 791 aa7.68□□□□□ -1.18
NUP88-202ENST00000570937 KANK3Q6NY19 840 aa7.68□□□□□ -1.18
NUP88-202ENST00000570937 CMTR1Q8N1G2 835 aaKnown RBP7.68□□□□□ -1.18
NUP88-202ENST00000570937 BEND7Q8N7W2 519 aaPredicted RBP7.68□□□□□ -1.18
NUP88-202ENST00000570937 PIK3R5Q8WYR1 880 aa7.68□□□□□ -1.18
NUP88-202ENST00000570937 CNTNAP5Q8WYK1 1306 aa7.68□□□□□ -1.18
NUP88-202ENST00000570937 PHF20L1A8MW92 1017 aa7.67□□□□□ -1.18
NUP88-202ENST00000570937 XYLBO75191 536 aa7.67□□□□□ -1.18
NUP88-202ENST00000570937 AMPD1P23109 780 aa7.67□□□□□ -1.18
NUP88-202ENST00000570937 ARID4AP29374 1257 aaPredicted RBP7.67□□□□□ -1.18
NUP88-202ENST00000570937 ADH7P40394 386 aa7.67□□□□□ -1.18
NUP88-202ENST00000570937 GSK3AP49840 483 aa7.67□□□□□ -1.18
NUP88-202ENST00000570937 SNRPNP63162 240 aaKnown RBP7.67□□□□□ -1.18
NUP88-202ENST00000570937 SF3B2Q13435 895 aaKnown RBP7.67□□□□□ -1.18
NUP88-202ENST00000570937 LINC00114Q6XXX2 140 aa7.67□□□□□ -1.18
NUP88-202ENST00000570937 PODNQ7Z5L7 613 aa7.67□□□□□ -1.18
NUP88-202ENST00000570937 ZFATQ9P243 1243 aa7.67□□□□□ -1.18
NUP88-202ENST00000570937 MKL2Q9ULH7 1088 aa7.67□□□□□ -1.18
NUP88-202ENST00000570937 SASH3O75995 380 aa7.66□□□□□ -1.18
NUP88-202ENST00000570937 TARSP26639 723 aaKnown RBP7.66□□□□□ -1.18
NUP88-202ENST00000570937 RASSF7Q02833 373 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms