RNA–Protein interactions for RNA: ENST00000570385.1

CTDNEP1-203, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-203ENST00000570385 RNF123Q5XPI4 1314 aa11.33□□□□□ -0.6
CTDNEP1-203ENST00000570385 AIMP1Q12904 312 aaKnown RBP11.32□□□□□ -0.6
CTDNEP1-203ENST00000570385 PDIA6Q15084 440 aa11.32□□□□□ -0.6
CTDNEP1-203ENST00000570385 KRT24Q2M2I5 525 aa11.32□□□□□ -0.6
CTDNEP1-203ENST00000570385 LDHDQ86WU2 507 aa11.32□□□□□ -0.6
CTDNEP1-203ENST00000570385 ZNF34Q8IZ26 560 aa11.32□□□□□ -0.6
CTDNEP1-203ENST00000570385 L3MBTL3Q96JM7 780 aaPredicted RBP11.32□□□□□ -0.6
CTDNEP1-203ENST00000570385 HACL1Q9UJ83 578 aa11.32□□□□□ -0.6
CTDNEP1-203ENST00000570385 GJA3Q9Y6H8 435 aa11.32□□□□□ -0.6
CTDNEP1-203ENST00000570385 PCNTO95613 3336 aa11.32□□□□□ -0.6
CTDNEP1-203ENST00000570385 NTSR2O95665 410 aa11.31□□□□□ -0.6
CTDNEP1-203ENST00000570385 EPHX2P34913 555 aa11.31□□□□□ -0.6
CTDNEP1-203ENST00000570385 TMPOP42166 694 aaKnown RBP11.31□□□□□ -0.6
CTDNEP1-203ENST00000570385 GIGYF2Q6Y7W6 1299 aaKnown RBP11.31□□□□□ -0.6
CTDNEP1-203ENST00000570385 JDP2Q8WYK2 163 aa11.31□□□□□ -0.6
CTDNEP1-203ENST00000570385 CREBZFQ9NS37 354 aa11.31□□□□□ -0.6
CTDNEP1-203ENST00000570385 LAS1LQ9Y4W2 734 aaKnown RBP11.31□□□□□ -0.6
CTDNEP1-203ENST00000570385 FZD9O00144 591 aa11.3□□□□□ -0.6
CTDNEP1-203ENST00000570385 PPEF1O14829 653 aaPredicted RBP11.3□□□□□ -0.6
CTDNEP1-203ENST00000570385 HOXA10P31260 410 aaPredicted RBP11.3□□□□□ -0.6
CTDNEP1-203ENST00000570385 RALBP1Q15311 655 aa11.3□□□□□ -0.6
CTDNEP1-203ENST00000570385 MAP1SQ66K74 1059 aaPredicted RBP11.3□□□□□ -0.6
CTDNEP1-203ENST00000570385 LRP10Q7Z4F1 713 aa11.3□□□□□ -0.6
CTDNEP1-203ENST00000570385 TNS4Q8IZW8 715 aa11.3□□□□□ -0.6
CTDNEP1-203ENST00000570385 LARGE2Q8N3Y3 721 aa11.3□□□□□ -0.6
CTDNEP1-203ENST00000570385 RBM17Q96I25 401 aaKnown RBP11.3□□□□□ -0.6
CTDNEP1-203ENST00000570385 ITGBL1O95965 494 aaPredicted RBP11.29□□□□□ -0.6
CTDNEP1-203ENST00000570385 HCLS1P14317 486 aaPredicted RBP11.29□□□□□ -0.6
CTDNEP1-203ENST00000570385 EIF6P56537 245 aaKnown RBP11.29□□□□□ -0.6
CTDNEP1-203ENST00000570385 COPS6Q7L5N1 327 aa11.29□□□□□ -0.6
CTDNEP1-203ENST00000570385 PPP1R42Q7Z4L9 355 aa11.29□□□□□ -0.6
CTDNEP1-203ENST00000570385 XAGE3Q8WTP9 111 aa11.29□□□□□ -0.6
CTDNEP1-203ENST00000570385 NLRP3Q96P20 1036 aa11.29□□□□□ -0.6
CTDNEP1-203ENST00000570385 CRAMP1Q96RY5 1269 aa11.29□□□□□ -0.6
CTDNEP1-203ENST00000570385 PSMD1Q99460 953 aa11.29□□□□□ -0.6
CTDNEP1-203ENST00000570385 UTP14AQ9BVJ6 771 aaKnown RBP11.29□□□□□ -0.6
CTDNEP1-203ENST00000570385 SCN4AP35499 1836 aa11.29□□□□□ -0.6
CTDNEP1-203ENST00000570385 COL4A5P29400 1685 aa11.29□□□□□ -0.6
CTDNEP1-203ENST00000570385 ERBB4Q15303 1308 aa11.29□□□□□ -0.6
CTDNEP1-203ENST00000570385 PASKQ96RG2 1323 aa11.29□□□□□ -0.6
CTDNEP1-203ENST00000570385 SNED1Q8TER0 1413 aa11.28□□□□□ -0.6
CTDNEP1-203ENST00000570385 PARP10Q53GL7 1025 aa11.28□□□□□ -0.6
CTDNEP1-203ENST00000570385 CC2D2BQ6DHV5 1058 aa11.28□□□□□ -0.6
CTDNEP1-203ENST00000570385 CNTROBQ8N137 903 aa11.28□□□□□ -0.6
CTDNEP1-203ENST00000570385 GPC2Q8N158 579 aa11.28□□□□□ -0.6
CTDNEP1-203ENST00000570385 IBTKQ9P2D0 1353 aaPredicted RBP11.28□□□□□ -0.6
CTDNEP1-203ENST00000570385 TMEM88BA6NKF7 163 aa11.27□□□□□ -0.61
CTDNEP1-203ENST00000570385 PPIP5K2O43314 1243 aa11.27□□□□□ -0.61
CTDNEP1-203ENST00000570385 EPS15P42566 896 aa11.27□□□□□ -0.61
CTDNEP1-203ENST00000570385 FMR1Q06787 632 aaKnown RBP eCLIP11.27□□□□□ -0.61
CTDNEP1-203ENST00000570385 LMOD3Q0VAK6 560 aa11.27□□□□□ -0.61
CTDNEP1-203ENST00000570385 AOC3Q16853 763 aa11.27□□□□□ -0.61
CTDNEP1-203ENST00000570385 LMOD1P29536 600 aaPredicted RBP11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 VEGFBP49765 207 aa11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 WDR43Q15061 677 aaKnown RBP eCLIP11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 SLC10A5Q5PT55 438 aa11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 PNMA8AQ86V59 439 aaPredicted RBP11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 NLRP10Q86W26 655 aa11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 NIM1KQ8IY84 436 aa11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 TMX4Q9H1E5 349 aaPredicted RBP11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 CHPF2Q9P2E5 772 aa11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 TRMT112Q9UI30 125 aaKnown RBP11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 TRIM35Q9UPQ4 493 aa11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 ABCC4O15439 1325 aa11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 MYBBP1AQ9BQG0 1328 aaKnown RBP11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 CNTNAP1P78357 1384 aa11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 RIC1Q4ADV7 1423 aa11.26□□□□□ -0.61
CTDNEP1-203ENST00000570385 CHL1O00533 1208 aa11.25□□□□□ -0.61
CTDNEP1-203ENST00000570385 FOXN1O15353 648 aa11.25□□□□□ -0.61
CTDNEP1-203ENST00000570385 SCNN1DP51172 638 aa11.25□□□□□ -0.61
CTDNEP1-203ENST00000570385 TCIRG1Q13488 830 aa11.25□□□□□ -0.61
CTDNEP1-203ENST00000570385 DDX21Q9NR30 783 aaKnown RBP eCLIP11.25□□□□□ -0.61
CTDNEP1-203ENST00000570385 BABAM1Q9NWV8 329 aa11.25□□□□□ -0.61
CTDNEP1-203ENST00000570385 ADAMTS8Q9UP79 889 aa11.25□□□□□ -0.61
CTDNEP1-203ENST00000570385 ATP6V0A2Q9Y487 856 aa11.25□□□□□ -0.61
CTDNEP1-203ENST00000570385 ATP5J2-PTCD1G3V325 749 aa11.24□□□□□ -0.61
CTDNEP1-203ENST00000570385 TRAF5O00463 557 aa11.24□□□□□ -0.61
CTDNEP1-203ENST00000570385 HSP90AB3PQ58FF7 597 aa11.24□□□□□ -0.61
CTDNEP1-203ENST00000570385 RTL5Q5HYW3 569 aaPredicted RBP11.24□□□□□ -0.61
CTDNEP1-203ENST00000570385 RUNDC1Q96C34 613 aa11.24□□□□□ -0.61
CTDNEP1-203ENST00000570385 ABT1Q9ULW3 272 aaKnown RBP11.24□□□□□ -0.61
CTDNEP1-203ENST00000570385 LTBP1Q14766 1721 aa11.23□□□□□ -0.61
CTDNEP1-203ENST00000570385 TAF1P21675 1872 aa11.23□□□□□ -0.61
CTDNEP1-203ENST00000570385 CXCL9Q07325 125 aa11.23□□□□□ -0.61
CTDNEP1-203ENST00000570385 GRM1Q13255 1194 aa11.23□□□□□ -0.61
CTDNEP1-203ENST00000570385 GRIPAP1Q4V328 841 aa11.23□□□□□ -0.61
CTDNEP1-203ENST00000570385 HDGFL1Q5TGJ6 251 aa11.23□□□□□ -0.61
CTDNEP1-203ENST00000570385 DPP8Q6V1X1 898 aaPredicted RBP11.23□□□□□ -0.61
CTDNEP1-203ENST00000570385 DDX46Q7L014 1031 aaKnown RBP11.23□□□□□ -0.61
CTDNEP1-203ENST00000570385 MPNDQ8N594 471 aa11.23□□□□□ -0.61
CTDNEP1-203ENST00000570385 SH3TC1Q8TE82 1336 aa11.23□□□□□ -0.61
CTDNEP1-203ENST00000570385 ADAMTSL1Q8N6G6 1762 aa11.23□□□□□ -0.61
CTDNEP1-203ENST00000570385 ELL2O00472 640 aaPredicted RBP11.22□□□□□ -0.61
CTDNEP1-203ENST00000570385 BBOX1O75936 387 aa11.22□□□□□ -0.61
CTDNEP1-203ENST00000570385 RAD17O75943 681 aa11.22□□□□□ -0.61
CTDNEP1-203ENST00000570385 DEFB115Q30KQ5 88 aa11.22□□□□□ -0.61
CTDNEP1-203ENST00000570385 DUSP27Q5VZP5 1158 aa11.22□□□□□ -0.61
CTDNEP1-203ENST00000570385 PAXIP1Q6ZW49 1069 aaPredicted RBP11.22□□□□□ -0.61
CTDNEP1-203ENST00000570385 SP8Q8IXZ3 490 aa11.22□□□□□ -0.61
CTDNEP1-203ENST00000570385 AIDAQ96BJ3 306 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms