RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 PI4KAP1Q8N8J0 262 aa9.93□□□□□ -0.82
VPS39-213ENST00000570062 PTCD2Q8WV60 388 aaKnown RBP9.93□□□□□ -0.82
VPS39-213ENST00000570062 SMARCC1Q92922 1105 aaPredicted RBP9.93□□□□□ -0.82
VPS39-213ENST00000570062 TSHZ2Q9NRE2 1034 aa9.93□□□□□ -0.82
VPS39-213ENST00000570062 RGPD2P0DJD1 1756 aa9.93□□□□□ -0.82
VPS39-213ENST00000570062 KDM3BQ7LBC6 1761 aa9.93□□□□□ -0.82
VPS39-213ENST00000570062 ARHGAP33O14559 1287 aa9.92□□□□□ -0.82
VPS39-213ENST00000570062 NUCB1Q02818 461 aa9.92□□□□□ -0.82
VPS39-213ENST00000570062 BEND3Q5T5X7 828 aa9.92□□□□□ -0.82
VPS39-213ENST00000570062 PLPP6Q8IY26 295 aa9.92□□□□□ -0.82
VPS39-213ENST00000570062 NECTIN2Q92692 538 aa9.92□□□□□ -0.82
VPS39-213ENST00000570062 C8orf37Q96NL8 207 aa9.92□□□□□ -0.82
VPS39-213ENST00000570062 DCTPP1Q9H773 170 aa9.92□□□□□ -0.82
VPS39-213ENST00000570062 PHAXQ9H814 394 aaKnown RBP9.92□□□□□ -0.82
VPS39-213ENST00000570062 GPHNQ9NQX3 736 aaPredicted RBP9.92□□□□□ -0.82
VPS39-213ENST00000570062 USP21Q9UK80 565 aa9.92□□□□□ -0.82
VPS39-213ENST00000570062 LRP6O75581 1613 aa9.92□□□□□ -0.82
VPS39-213ENST00000570062 NWD2Q9ULI1 1742 aa9.91□□□□□ -0.82
VPS39-213ENST00000570062 ATP8B2P98198 1209 aa9.91□□□□□ -0.82
VPS39-213ENST00000570062 FAM161AQ3B820 660 aa9.91□□□□□ -0.82
VPS39-213ENST00000570062 CEP85Q6P2H3 762 aa9.91□□□□□ -0.82
VPS39-213ENST00000570062 CHD1LQ86WJ1 897 aa9.91□□□□□ -0.82
VPS39-213ENST00000570062 PLBD2Q8NHP8 589 aa9.91□□□□□ -0.82
VPS39-213ENST00000570062 PDZRN3Q9UPQ7 1066 aa9.91□□□□□ -0.82
VPS39-213ENST00000570062 SCN11AQ9UI33 1791 aa9.91□□□□□ -0.82
VPS39-213ENST00000570062 CACNA1FO60840 1977 aa9.9□□□□□ -0.82
VPS39-213ENST00000570062 F6X3S4 739 aa9.9□□□□□ -0.82
VPS39-213ENST00000570062 RAB11FIP3O75154 756 aa9.9□□□□□ -0.82
VPS39-213ENST00000570062 PDIA6Q15084 440 aa9.9□□□□□ -0.82
VPS39-213ENST00000570062 PIGBQ92521 554 aa9.9□□□□□ -0.82
VPS39-213ENST00000570062 METTL22Q9BUU2 404 aaPredicted RBP9.9□□□□□ -0.82
VPS39-213ENST00000570062 C9orf78Q9NZ63 289 aaPredicted RBP9.9□□□□□ -0.82
VPS39-213ENST00000570062 TRPC5Q9UL62 973 aaPredicted RBP9.9□□□□□ -0.82
VPS39-213ENST00000570062 MAP3K2Q9Y2U5 619 aa9.9□□□□□ -0.82
VPS39-213ENST00000570062 USP16Q9Y5T5 823 aa9.9□□□□□ -0.82
VPS39-213ENST00000570062 BCL9O00512 1426 aa9.9□□□□□ -0.83
VPS39-213ENST00000570062 PLCH1Q4KWH8 1693 aa9.9□□□□□ -0.83
VPS39-213ENST00000570062 PDE4AP27815 886 aa9.89□□□□□ -0.83
VPS39-213ENST00000570062 HSP90AB3PQ58FF7 597 aa9.89□□□□□ -0.83
VPS39-213ENST00000570062 ADGRD1Q6QNK2 874 aa9.89□□□□□ -0.83
VPS39-213ENST00000570062 COPS6Q7L5N1 327 aa9.89□□□□□ -0.83
VPS39-213ENST00000570062 MEIS3Q99687 375 aa9.89□□□□□ -0.83
VPS39-213ENST00000570062 USP44Q9H0E7 712 aa9.89□□□□□ -0.83
VPS39-213ENST00000570062 ATG3Q9NT62 314 aa9.89□□□□□ -0.83
VPS39-213ENST00000570062 SIPA1L3O60292 1781 aaPredicted RBP9.88□□□□□ -0.83
VPS39-213ENST00000570062 UTYO14607 1347 aa9.88□□□□□ -0.83
VPS39-213ENST00000570062 BCL9LQ86UU0 1499 aa9.88□□□□□ -0.83
VPS39-213ENST00000570062 TBC1D12O60347 775 aa9.88□□□□□ -0.83
VPS39-213ENST00000570062 ONECUT3O60422 494 aaPredicted RBP9.88□□□□□ -0.83
VPS39-213ENST00000570062 MTX1Q13505 466 aa9.88□□□□□ -0.83
VPS39-213ENST00000570062 DSG2Q14126 1118 aa9.88□□□□□ -0.83
VPS39-213ENST00000570062 ANKRD45Q5TZF3 282 aa9.88□□□□□ -0.83
VPS39-213ENST00000570062 ERC1Q8IUD2 1116 aa9.88□□□□□ -0.83
VPS39-213ENST00000570062 XAGE3Q8WTP9 111 aa9.88□□□□□ -0.83
VPS39-213ENST00000570062 BACH2Q9BYV9 841 aa9.88□□□□□ -0.83
VPS39-213ENST00000570062 UPF2Q9HAU5 1272 aaKnown RBP9.88□□□□□ -0.83
VPS39-213ENST00000570062 GRM8O00222 908 aa9.87□□□□□ -0.83
VPS39-213ENST00000570062 PTCD1O75127 700 aaKnown RBP9.87□□□□□ -0.83
VPS39-213ENST00000570062 HSP90B1P14625 803 aaKnown RBP9.87□□□□□ -0.83
VPS39-213ENST00000570062 MYL6BP14649 208 aa9.87□□□□□ -0.83
VPS39-213ENST00000570062 PRIM1P49642 420 aaKnown RBP9.87□□□□□ -0.83
VPS39-213ENST00000570062 RGS3P49796 1198 aa9.87□□□□□ -0.83
VPS39-213ENST00000570062 TRIM28Q13263 835 aaKnown RBP9.87□□□□□ -0.83
VPS39-213ENST00000570062 KIF6Q6ZMV9 814 aa9.87□□□□□ -0.83
VPS39-213ENST00000570062 SIRT2Q8IXJ6 389 aa9.87□□□□□ -0.83
VPS39-213ENST00000570062 GJD4Q96KN9 370 aaPredicted RBP9.87□□□□□ -0.83
VPS39-213ENST00000570062 RBM19Q9Y4C8 960 aaKnown RBP9.87□□□□□ -0.83
VPS39-213ENST00000570062 ADCY9O60503 1353 aa9.87□□□□□ -0.83
VPS39-213ENST00000570062 COL15A1P39059 1388 aa9.87□□□□□ -0.83
VPS39-213ENST00000570062 IL6STP40189 918 aaPredicted RBP9.86□□□□□ -0.83
VPS39-213ENST00000570062 AIMP1Q12904 312 aaKnown RBP9.86□□□□□ -0.83
VPS39-213ENST00000570062 FAM98CQ17RN3 349 aaKnown RBP9.86□□□□□ -0.83
VPS39-213ENST00000570062 LRP10Q7Z4F1 713 aa9.86□□□□□ -0.83
VPS39-213ENST00000570062 MARCH10Q8NA82 808 aaPredicted RBP9.86□□□□□ -0.83
VPS39-213ENST00000570062 CCDC191Q8NCU4 936 aa9.86□□□□□ -0.83
VPS39-213ENST00000570062 SSH3Q8TE77 659 aa9.86□□□□□ -0.83
VPS39-213ENST00000570062 SYTL4Q96C24 671 aaPredicted RBP9.86□□□□□ -0.83
VPS39-213ENST00000570062 ASAP1Q9ULH1 1129 aa9.86□□□□□ -0.83
VPS39-213ENST00000570062 A0A087WZG4 1122 aa9.85□□□□□ -0.83
VPS39-213ENST00000570062 PRAMEF22A3QJZ6 481 aa9.85□□□□□ -0.83
VPS39-213ENST00000570062 NEURL1BA8MQ27 555 aa9.85□□□□□ -0.83
VPS39-213ENST00000570062 ERVV-1B6SEH8 477 aa9.85□□□□□ -0.83
VPS39-213ENST00000570062 GCKRQ14397 625 aa9.85□□□□□ -0.83
VPS39-213ENST00000570062 PROSER3Q2NL68 480 aa9.85□□□□□ -0.83
VPS39-213ENST00000570062 PPP4R3BQ5MIZ7 849 aa9.85□□□□□ -0.83
VPS39-213ENST00000570062 LRRCC1Q9C099 1032 aa9.85□□□□□ -0.83
VPS39-213ENST00000570062 C1orf115Q9H7X2 142 aa9.85□□□□□ -0.83
VPS39-213ENST00000570062 HCSTQ9UBK5 93 aa9.85□□□□□ -0.83
VPS39-213ENST00000570062 NRAPQ86VF7 1730 aa9.85□□□□□ -0.83
VPS39-213ENST00000570062 KCPQ6ZWJ8 1503 aa9.84□□□□□ -0.83
VPS39-213ENST00000570062 TK2O00142 265 aa9.84□□□□□ -0.83
VPS39-213ENST00000570062 ANXA1P04083 346 aa9.84□□□□□ -0.83
VPS39-213ENST00000570062 CYP19A1P11511 503 aaPredicted RBP9.84□□□□□ -0.83
VPS39-213ENST00000570062 RXRBP28702 533 aa9.84□□□□□ -0.83
VPS39-213ENST00000570062 ANP32AP39687 249 aaKnown RBP9.84□□□□□ -0.83
VPS39-213ENST00000570062 PSEN2P49810 448 aa9.84□□□□□ -0.83
VPS39-213ENST00000570062 BMP2KLQ5H9B9 411 aa9.84□□□□□ -0.83
VPS39-213ENST00000570062 ZNF772Q68DY9 489 aaPredicted RBP9.84□□□□□ -0.83
VPS39-213ENST00000570062 KIF1BPQ96EK5 621 aa9.84□□□□□ -0.83
VPS39-213ENST00000570062 MYD88Q99836 296 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms