RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 FSD1Q9BTV5 496 aa10.55□□□□□ -0.72
LINC00558-201ENST00000569422 MARF1Q9Y4F3 1742 aaKnown RBP10.54□□□□□ -0.72
LINC00558-201ENST00000569422 FAM208AQ9UK61 1670 aaKnown RBP10.54□□□□□ -0.72
LINC00558-201ENST00000569422 CYP27B1O15528 508 aa10.54□□□□□ -0.72
LINC00558-201ENST00000569422 LARP1Q6PKG0 1096 aaKnown RBP10.54□□□□□ -0.72
LINC00558-201ENST00000569422 CCDC83Q8IWF9 413 aa10.54□□□□□ -0.72
LINC00558-201ENST00000569422 C1orf167Q5SNV9 1468 aa10.54□□□□□ -0.72
LINC00558-201ENST00000569422 AOX1Q06278 1338 aa10.54□□□□□ -0.72
LINC00558-201ENST00000569422 TMEM63CQ9P1W3 806 aa10.54□□□□□ -0.72
LINC00558-201ENST00000569422 RGPD2P0DJD1 1756 aa10.54□□□□□ -0.72
LINC00558-201ENST00000569422 LRRC37A3O60309 1634 aa10.54□□□□□ -0.72
LINC00558-201ENST00000569422 PXDNLA1KZ92 1463 aa10.54□□□□□ -0.72
LINC00558-201ENST00000569422 NEURL1BA8MQ27 555 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 LARGE1O95461 756 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 CHGBP05060 677 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 CLEC17AQ6ZS10 378 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 RUFY2Q8WXA3 655 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 GADD45BO75293 160 aaPredicted RBP10.53□□□□□ -0.72
LINC00558-201ENST00000569422 BRD1O95696 1058 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 NMIQ13287 307 aaPredicted RBP10.53□□□□□ -0.72
LINC00558-201ENST00000569422 CUL4AQ13619 759 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 COL9A3Q14050 684 aaPredicted RBP10.53□□□□□ -0.72
LINC00558-201ENST00000569422 GCKRQ14397 625 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 ERC1Q8IUD2 1116 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 NECAB1Q8N987 351 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 DNAJC2Q99543 621 aaKnown RBP10.53□□□□□ -0.72
LINC00558-201ENST00000569422 RBSNQ9H1K0 784 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 TTC41PQ6P2S7 1318 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 A0A087WZG4 1122 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 TOM1L2Q6ZVM7 507 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 RUFY3Q7L099 469 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 STRN4Q9NRL3 753 aa10.53□□□□□ -0.72
LINC00558-201ENST00000569422 ERBB4Q15303 1308 aa10.52□□□□□ -0.73
LINC00558-201ENST00000569422 SNRPA1P09661 255 aaKnown RBP10.52□□□□□ -0.73
LINC00558-201ENST00000569422 SMC3Q9UQE7 1217 aa10.52□□□□□ -0.73
LINC00558-201ENST00000569422 CHD2O14647 1828 aaKnown RBP10.52□□□□□ -0.73
LINC00558-201ENST00000569422 MTX1Q13505 466 aa10.52□□□□□ -0.73
LINC00558-201ENST00000569422 EVI5LQ96CN4 794 aa10.52□□□□□ -0.73
LINC00558-201ENST00000569422 PDRG1Q9NUG6 133 aa10.52□□□□□ -0.73
LINC00558-201ENST00000569422 HDAC5Q9UQL6 1122 aa10.52□□□□□ -0.73
LINC00558-201ENST00000569422 ESPNB1AK53 854 aa10.51□□□□□ -0.73
LINC00558-201ENST00000569422 CCDC85AQ96PX6 553 aaPredicted RBP10.51□□□□□ -0.73
LINC00558-201ENST00000569422 ARID3AQ99856 593 aa10.51□□□□□ -0.73
LINC00558-201ENST00000569422 PRDM11Q9NQV5 511 aa10.51□□□□□ -0.73
LINC00558-201ENST00000569422 LIMCH1Q9UPQ0 1083 aa10.51□□□□□ -0.73
LINC00558-201ENST00000569422 RBM8AQ9Y5S9 174 aaKnown RBP10.51□□□□□ -0.73
LINC00558-201ENST00000569422 A0A0D9SFI3 127 aa10.51□□□□□ -0.73
LINC00558-201ENST00000569422 VPS37CA5D8V6 355 aaPredicted RBP10.51□□□□□ -0.73
LINC00558-201ENST00000569422 FIBPO43427 364 aa10.51□□□□□ -0.73
LINC00558-201ENST00000569422 TFCP2Q12800 502 aa10.51□□□□□ -0.73
LINC00558-201ENST00000569422 STK3Q13188 491 aa10.51□□□□□ -0.73
LINC00558-201ENST00000569422 NEUROD6Q96NK8 337 aa10.51□□□□□ -0.73
LINC00558-201ENST00000569422 FMNL2Q96PY5 1086 aa10.51□□□□□ -0.73
LINC00558-201ENST00000569422 METTL22Q9BUU2 404 aaPredicted RBP10.51□□□□□ -0.73
LINC00558-201ENST00000569422 ZBTB3Q9H5J0 574 aa10.51□□□□□ -0.73
LINC00558-201ENST00000569422 ISY1Q9ULR0 285 aaKnown RBP10.51□□□□□ -0.73
LINC00558-201ENST00000569422 CNPY2Q9Y2B0 182 aa10.51□□□□□ -0.73
LINC00558-201ENST00000569422 ZKSCAN1P17029 563 aaPredicted RBP10.51□□□□□ -0.73
LINC00558-201ENST00000569422 USP48Q86UV5 1035 aa10.51□□□□□ -0.73
LINC00558-201ENST00000569422 MPNDQ8N594 471 aa10.51□□□□□ -0.73
LINC00558-201ENST00000569422 BBXQ8WY36 941 aaPredicted RBP10.51□□□□□ -0.73
LINC00558-201ENST00000569422 A1BGP04217 495 aa10.5□□□□□ -0.73
LINC00558-201ENST00000569422 INTS4Q96HW7 963 aaKnown RBP10.5□□□□□ -0.73
LINC00558-201ENST00000569422 DCAF5Q96JK2 942 aa10.5□□□□□ -0.73
LINC00558-201ENST00000569422 TAF6LQ9Y6J9 622 aa10.5□□□□□ -0.73
LINC00558-201ENST00000569422 KDM6AO15550 1401 aaPredicted RBP10.5□□□□□ -0.73
LINC00558-201ENST00000569422 SLFNL1Q499Z3 407 aa10.5□□□□□ -0.73
LINC00558-201ENST00000569422 GRIPAP1Q4V328 841 aa10.5□□□□□ -0.73
LINC00558-201ENST00000569422 CCDC129Q6ZRS4 1044 aa10.5□□□□□ -0.73
LINC00558-201ENST00000569422 CYP46A1Q9Y6A2 500 aa10.5□□□□□ -0.73
LINC00558-201ENST00000569422 HEG1Q9ULI3 1381 aa10.49□□□□□ -0.73
LINC00558-201ENST00000569422 SYT1P21579 422 aa10.49□□□□□ -0.73
LINC00558-201ENST00000569422 LMBR1LQ6UX01 489 aa10.49□□□□□ -0.73
LINC00558-201ENST00000569422 ZNF589Q86UQ0 364 aaPredicted RBP10.49□□□□□ -0.73
LINC00558-201ENST00000569422 MEGF6O75095 1541 aa10.49□□□□□ -0.73
LINC00558-201ENST00000569422 WDR33Q9C0J8 1336 aaKnown RBP10.49□□□□□ -0.73
LINC00558-201ENST00000569422 GJB2P29033 226 aa10.49□□□□□ -0.73
LINC00558-201ENST00000569422 CREB3L3Q68CJ9 461 aa10.49□□□□□ -0.73
LINC00558-201ENST00000569422 FAM43BQ6ZT52 329 aaPredicted RBP10.49□□□□□ -0.73
LINC00558-201ENST00000569422 TTLL7Q6ZT98 887 aa10.49□□□□□ -0.73
LINC00558-201ENST00000569422 DDX46Q7L014 1031 aaKnown RBP10.49□□□□□ -0.73
LINC00558-201ENST00000569422 FERMT3Q86UX7 667 aa10.49□□□□□ -0.73
LINC00558-201ENST00000569422 TTC14Q96N46 770 aa10.49□□□□□ -0.73
LINC00558-201ENST00000569422 SEC62Q99442 399 aaKnown RBP10.49□□□□□ -0.73
LINC00558-201ENST00000569422 CCDC171Q6TFL3 1326 aa10.49□□□□□ -0.73
LINC00558-201ENST00000569422 GTF2E1P29083 439 aaPredicted RBP10.49□□□□□ -0.73
LINC00558-201ENST00000569422 ZNF445P59923 1031 aa10.49□□□□□ -0.73
LINC00558-201ENST00000569422 CADPS2Q86UW7 1296 aa10.49□□□□□ -0.73
LINC00558-201ENST00000569422 DBNDD2Q9BQY9 259 aa10.49□□□□□ -0.73
LINC00558-201ENST00000569422 PLCD4Q9BRC7 762 aa10.49□□□□□ -0.73
LINC00558-201ENST00000569422 A0A0G2JS52 829 aa10.48□□□□□ -0.73
LINC00558-201ENST00000569422 STX6O43752 255 aa10.48□□□□□ -0.73
LINC00558-201ENST00000569422 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.48□□□□□ -0.73
LINC00558-201ENST00000569422 NCAPD2Q15021 1401 aa10.48□□□□□ -0.73
LINC00558-201ENST00000569422 PPFIA3O75145 1194 aa10.48□□□□□ -0.73
LINC00558-201ENST00000569422 ME3Q16798 604 aa10.48□□□□□ -0.73
LINC00558-201ENST00000569422 FAM173BQ6P4H8 233 aa10.48□□□□□ -0.73
LINC00558-201ENST00000569422 ZNF594Q96JF6 807 aaPredicted RBP10.48□□□□□ -0.73
LINC00558-201ENST00000569422 DBNLQ9UJU6 430 aaKnown RBP10.48□□□□□ -0.73
LINC00558-201ENST00000569422 MED1Q15648 1581 aaPredicted RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms