RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 TAOK3Q9H2K8 898 aa19.38■□□□□ 0.69
CLN3-213ENST00000565047 RRAGCQ9HB90 399 aa19.38■□□□□ 0.69
CLN3-213ENST00000565047 DICER1Q9UPY3 1922 aaKnown RBP19.37■□□□□ 0.69
CLN3-213ENST00000565047 AIMP1Q12904 312 aaKnown RBP19.37■□□□□ 0.69
CLN3-213ENST00000565047 TCIRG1Q13488 830 aa19.37■□□□□ 0.69
CLN3-213ENST00000565047 PPP1R42Q7Z4L9 355 aa19.37■□□□□ 0.69
CLN3-213ENST00000565047 NLRP10Q86W26 655 aa19.37■□□□□ 0.69
CLN3-213ENST00000565047 GNAI1P63096 354 aa19.36■□□□□ 0.69
CLN3-213ENST00000565047 CCDC27Q2M243 656 aa19.36■□□□□ 0.69
CLN3-213ENST00000565047 NCBP3Q53F19 620 aaKnown RBP19.36■□□□□ 0.69
CLN3-213ENST00000565047 CCDC93Q567U6 631 aa19.36■□□□□ 0.69
CLN3-213ENST00000565047 RBM46Q8TBY0 533 aaKnown RBP19.36■□□□□ 0.69
CLN3-213ENST00000565047 DBF4Q9UBU7 674 aaPredicted RBP19.36■□□□□ 0.69
CLN3-213ENST00000565047 ANKRD36CQ5JPF3 1778 aa19.35■□□□□ 0.69
CLN3-213ENST00000565047 CALD1Q05682 793 aaKnown RBP19.35■□□□□ 0.69
CLN3-213ENST00000565047 C8orf58Q8NAV2 365 aa19.35■□□□□ 0.69
CLN3-213ENST00000565047 UTP14AQ9BVJ6 771 aaKnown RBP19.35■□□□□ 0.69
CLN3-213ENST00000565047 RNF123Q5XPI4 1314 aa19.34■□□□□ 0.69
CLN3-213ENST00000565047 FKBP4Q02790 459 aaKnown RBP eCLIP19.34■□□□□ 0.69
CLN3-213ENST00000565047 HSP90AB3PQ58FF7 597 aa19.34■□□□□ 0.69
CLN3-213ENST00000565047 SLC51AQ86UW1 340 aa19.34■□□□□ 0.69
CLN3-213ENST00000565047 SYNE4Q8N205 404 aa19.34■□□□□ 0.69
CLN3-213ENST00000565047 PLBD2Q8NHP8 589 aa19.34■□□□□ 0.69
CLN3-213ENST00000565047 CRAMP1Q96RY5 1269 aa19.34■□□□□ 0.69
CLN3-213ENST00000565047 ANKRD13DQ6ZTN6 518 aa19.33■□□□□ 0.68
CLN3-213ENST00000565047 WWC1Q8IX03 1113 aa19.33■□□□□ 0.68
CLN3-213ENST00000565047 RTKN2Q8IZC4 609 aa19.33■□□□□ 0.68
CLN3-213ENST00000565047 ISCA1Q9BUE6 129 aa19.33■□□□□ 0.68
CLN3-213ENST00000565047 HYPKQ9NX55 129 aa19.33■□□□□ 0.68
CLN3-213ENST00000565047 WDR90Q96KV7 1748 aa19.33■□□□□ 0.68
CLN3-213ENST00000565047 ELL2O00472 640 aaPredicted RBP19.31■□□□□ 0.68
CLN3-213ENST00000565047 ANP32CO43423 234 aa19.31■□□□□ 0.68
CLN3-213ENST00000565047 TSPYL6Q8N831 410 aa19.31■□□□□ 0.68
CLN3-213ENST00000565047 NLRP3Q96P20 1036 aa19.31■□□□□ 0.68
CLN3-213ENST00000565047 PSMD1Q99460 953 aa19.31■□□□□ 0.68
CLN3-213ENST00000565047 MRS2Q9HD23 443 aa19.31■□□□□ 0.68
CLN3-213ENST00000565047 ZNF277Q9NRM2 450 aaPredicted RBP19.31■□□□□ 0.68
CLN3-213ENST00000565047 VEGFAP15692 232 aaPredicted RBP19.3■□□□□ 0.68
CLN3-213ENST00000565047 TRIM28Q13263 835 aaKnown RBP19.3■□□□□ 0.68
CLN3-213ENST00000565047 PHAXQ9H814 394 aaKnown RBP19.3■□□□□ 0.68
CLN3-213ENST00000565047 FSTL1Q12841 308 aa19.29■□□□□ 0.68
CLN3-213ENST00000565047 CC2D2BQ6DHV5 1058 aa19.29■□□□□ 0.68
CLN3-213ENST00000565047 DPY19L2Q6NUT2 758 aa19.29■□□□□ 0.68
CLN3-213ENST00000565047 RPGRQ92834 1020 aaKnown RBP19.29■□□□□ 0.68
CLN3-213ENST00000565047 RBM17Q96I25 401 aaKnown RBP19.29■□□□□ 0.68
CLN3-213ENST00000565047 COL4A5P29400 1685 aa19.28■□□□□ 0.68
CLN3-213ENST00000565047 DDNO94850 711 aaPredicted RBP19.28■□□□□ 0.68
CLN3-213ENST00000565047 HCLS1P14317 486 aaPredicted RBP19.28■□□□□ 0.68
CLN3-213ENST00000565047 TRMT112Q9UI30 125 aaKnown RBP19.28■□□□□ 0.68
CLN3-213ENST00000565047 LAMB2P55268 1798 aa19.28■□□□□ 0.68
CLN3-213ENST00000565047 ABCC4O15439 1325 aa19.27■□□□□ 0.68
CLN3-213ENST00000565047 IL16Q14005 1332 aa19.27■□□□□ 0.68
CLN3-213ENST00000565047 SH3TC1Q8TE82 1336 aa19.27■□□□□ 0.68
CLN3-213ENST00000565047 FZD9O00144 591 aa19.27■□□□□ 0.68
CLN3-213ENST00000565047 IARSP41252 1262 aaKnown RBP19.27■□□□□ 0.68
CLN3-213ENST00000565047 DNAJC5GQ8N7S2 189 aa19.27■□□□□ 0.68
CLN3-213ENST00000565047 TSR2Q969E8 191 aaKnown RBP19.27■□□□□ 0.68
CLN3-213ENST00000565047 ATP5J2-PTCD1G3V325 749 aa19.26■□□□□ 0.67
CLN3-213ENST00000565047 C16orf71Q8IYS4 520 aaPredicted RBP19.26■□□□□ 0.67
CLN3-213ENST00000565047 L3MBTL3Q96JM7 780 aaPredicted RBP19.26■□□□□ 0.67
CLN3-213ENST00000565047 ZNF541Q9H0D2 1346 aa19.25■□□□□ 0.67
CLN3-213ENST00000565047 PPEF1O14829 653 aaPredicted RBP19.25■□□□□ 0.67
CLN3-213ENST00000565047 APLP1P51693 650 aa19.25■□□□□ 0.67
CLN3-213ENST00000565047 GRIPAP1Q4V328 841 aa19.25■□□□□ 0.67
CLN3-213ENST00000565047 FAM89AQ96GI7 184 aa19.25■□□□□ 0.67
CLN3-213ENST00000565047 ATP6V0A2Q9Y487 856 aa19.25■□□□□ 0.67
CLN3-213ENST00000565047 DDX60Q8IY21 1712 aaKnown RBP19.25■□□□□ 0.67
CLN3-213ENST00000565047 CCDC30Q5VVM6 783 aa19.24■□□□□ 0.67
CLN3-213ENST00000565047 ZNF428Q96B54 188 aa19.24■□□□□ 0.67
CLN3-213ENST00000565047 BBOX1O75936 387 aa19.23■□□□□ 0.67
CLN3-213ENST00000565047 SF3B3Q15393 1217 aaKnown RBP19.23■□□□□ 0.67
CLN3-213ENST00000565047 SMC1BQ8NDV3 1235 aa19.23■□□□□ 0.67
CLN3-213ENST00000565047 RTFDC1Q9BY42 306 aaPredicted RBP19.23■□□□□ 0.67
CLN3-213ENST00000565047 COL4A1P02462 1669 aa19.22■□□□□ 0.67
CLN3-213ENST00000565047 SP8Q8IXZ3 490 aa19.22■□□□□ 0.67
CLN3-213ENST00000565047 TCERG1O14776 1098 aaKnown RBP19.21■□□□□ 0.67
CLN3-213ENST00000565047 POTEIP0CG38 1075 aa19.21■□□□□ 0.67
CLN3-213ENST00000565047 POTEJP0CG39 1038 aa19.21■□□□□ 0.67
CLN3-213ENST00000565047 GRAPQ13588 217 aa19.21■□□□□ 0.67
CLN3-213ENST00000565047 RIC3Q7Z5B4 369 aa19.21■□□□□ 0.67
CLN3-213ENST00000565047 WDR63Q8IWG1 891 aa19.21■□□□□ 0.67
CLN3-213ENST00000565047 GRAPLQ8TC17 118 aaPredicted RBP19.21■□□□□ 0.67
CLN3-213ENST00000565047 METTL22Q9BUU2 404 aaPredicted RBP19.21■□□□□ 0.67
CLN3-213ENST00000565047 GOLGA2Q08379 1002 aa19.2■□□□□ 0.66
CLN3-213ENST00000565047 TWISTNBQ3B726 338 aaPredicted RBP19.2■□□□□ 0.66
CLN3-213ENST00000565047 ZBTB38Q8NAP3 1195 aaPredicted RBP19.2■□□□□ 0.66
CLN3-213ENST00000565047 CHMP4AQ9BY43 222 aa19.2■□□□□ 0.66
CLN3-213ENST00000565047 SPINK5Q9NQ38 1064 aaPredicted RBP19.2■□□□□ 0.66
CLN3-213ENST00000565047 HTRA3P83110 453 aa19.19■□□□□ 0.66
CLN3-213ENST00000565047 DDX46Q7L014 1031 aaKnown RBP19.19■□□□□ 0.66
CLN3-213ENST00000565047 CCDC191Q8NCU4 936 aa19.19■□□□□ 0.66
CLN3-213ENST00000565047 VPS33BQ9H267 617 aa19.19■□□□□ 0.66
CLN3-213ENST00000565047 TAF1DQ9H5J8 278 aaPredicted RBP19.19■□□□□ 0.66
CLN3-213ENST00000565047 TAF1P21675 1872 aa19.19■□□□□ 0.66
CLN3-213ENST00000565047 FANCIQ9NVI1 1328 aa19.19■□□□□ 0.66
CLN3-213ENST00000565047 KSR2Q6VAB6 950 aa19.18■□□□□ 0.66
CLN3-213ENST00000565047 G2E3Q7L622 706 aa19.18■□□□□ 0.66
CLN3-213ENST00000565047 GPC2Q8N158 579 aa19.18■□□□□ 0.66
CLN3-213ENST00000565047 MYD88Q99836 296 aa19.18■□□□□ 0.66
CLN3-213ENST00000565047 SCN4AP35499 1836 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms