RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	ATP2B3	Q16720	1220 aa		13.34	□□□□□ -0.27
TCF4-222	ENST00000564228	CCDC30	Q5VVM6	783 aa		13.34	□□□□□ -0.27
TCF4-222	ENST00000564228	FEZ1	Q99689	392 aa		13.34	□□□□□ -0.27
TCF4-222	ENST00000564228	STK31	Q9BXU1	1019 aa		13.34	□□□□□ -0.27
TCF4-222	ENST00000564228	SOS1	Q07889	1333 aa	Predicted RBP	13.33	□□□□□ -0.28
TCF4-222	ENST00000564228	PRAMEF22	A3QJZ6	481 aa		13.33	□□□□□ -0.28
TCF4-222	ENST00000564228	ST18	O60284	1047 aa		13.33	□□□□□ -0.28
TCF4-222	ENST00000564228	GIGYF1	O75420	1035 aa	Predicted RBP	13.33	□□□□□ -0.28
TCF4-222	ENST00000564228	ZNF496	Q96IT1	587 aa	Predicted RBP	13.33	□□□□□ -0.28
TCF4-222	ENST00000564228	ANKRD45	Q5TZF3	282 aa		13.33	□□□□□ -0.28
TCF4-222	ENST00000564228	PDCL2	Q8N4E4	241 aa		13.33	□□□□□ -0.28
TCF4-222	ENST00000564228	PIGB	Q92521	554 aa		13.33	□□□□□ -0.28
TCF4-222	ENST00000564228	ANKRD7	Q92527	254 aa		13.33	□□□□□ -0.28
TCF4-222	ENST00000564228	ACSBG1	Q96GR2	724 aa		13.33	□□□□□ -0.28
TCF4-222	ENST00000564228	DIAPH3	Q9NSV4	1193 aa		13.33	□□□□□ -0.28
TCF4-222	ENST00000564228	ZDHHC9	Q9Y397	364 aa		13.33	□□□□□ -0.28
TCF4-222	ENST00000564228	HEG1	Q9ULI3	1381 aa		13.32	□□□□□ -0.28
TCF4-222	ENST00000564228	HOXB7	P09629	217 aa		13.32	□□□□□ -0.28
TCF4-222	ENST00000564228	FMNL2	Q96PY5	1086 aa		13.32	□□□□□ -0.28
TCF4-222	ENST00000564228	BCL2L12	Q9HB09	334 aa		13.32	□□□□□ -0.28
TCF4-222	ENST00000564228	LAMB4	A4D0S4	1761 aa		13.32	□□□□□ -0.28
TCF4-222	ENST00000564228	PTCD1	O75127	700 aa	Known RBP	13.31	□□□□□ -0.28
TCF4-222	ENST00000564228	PKP1	Q13835	747 aa		13.31	□□□□□ -0.28
TCF4-222	ENST00000564228	USP26	Q9BXU7	913 aa		13.31	□□□□□ -0.28
TCF4-222	ENST00000564228	BRWD3	Q6RI45	1802 aa		13.31	□□□□□ -0.28
TCF4-222	ENST00000564228	GABPB1	Q06547	395 aa	Predicted RBP	13.31	□□□□□ -0.28
TCF4-222	ENST00000564228	TMEM51	Q9NW97	253 aa		13.31	□□□□□ -0.28
TCF4-222	ENST00000564228	ASAP1	Q9ULH1	1129 aa		13.31	□□□□□ -0.28
TCF4-222	ENST00000564228	BCL9	O00512	1426 aa		13.3	□□□□□ -0.28
TCF4-222	ENST00000564228	KCP	Q6ZWJ8	1503 aa		13.3	□□□□□ -0.28
TCF4-222	ENST00000564228	SYCP1	Q15431	976 aa		13.3	□□□□□ -0.28
TCF4-222	ENST00000564228	FAM182B	Q5T319	152 aa		13.3	□□□□□ -0.28
TCF4-222	ENST00000564228	G2E3	Q7L622	706 aa		13.3	□□□□□ -0.28
TCF4-222	ENST00000564228	CHPF2	Q9P2E5	772 aa		13.3	□□□□□ -0.28
TCF4-222	ENST00000564228	TPM3	P06753	285 aa		13.29	□□□□□ -0.28
TCF4-222	ENST00000564228	ZNF772	Q68DY9	489 aa	Predicted RBP	13.29	□□□□□ -0.28
TCF4-222	ENST00000564228	SEPT12	Q8IYM1	358 aa		13.29	□□□□□ -0.28
TCF4-222	ENST00000564228	ARHGAP45	Q92619	1136 aa		13.29	□□□□□ -0.28
TCF4-222	ENST00000564228	CTIF	O43310	598 aa	Known RBP	13.29	□□□□□ -0.28
TCF4-222	ENST00000564228	ANXA1	P04083	346 aa		13.29	□□□□□ -0.28
TCF4-222	ENST00000564228	SNRPA1	P09661	255 aa	Known RBP	13.29	□□□□□ -0.28
TCF4-222	ENST00000564228	CHAF1A	Q13111	956 aa	Predicted RBP	13.29	□□□□□ -0.28
TCF4-222	ENST00000564228	INTS3	Q68E01	1043 aa	Known RBP	13.29	□□□□□ -0.28
TCF4-222	ENST00000564228	IPO4	Q8TEX9	1081 aa	Known RBP	13.29	□□□□□ -0.28
TCF4-222	ENST00000564228	CHMP4A	Q9BY43	222 aa		13.29	□□□□□ -0.28
TCF4-222	ENST00000564228	ATG3	Q9NT62	314 aa		13.29	□□□□□ -0.28
TCF4-222	ENST00000564228	OGFR	Q9NZT2	677 aa		13.29	□□□□□ -0.28
TCF4-222	ENST00000564228	SBF2	Q86WG5	1849 aa		13.29	□□□□□ -0.28
TCF4-222	ENST00000564228	ZBTB7B	O15156	539 aa	Predicted RBP	13.28	□□□□□ -0.28
TCF4-222	ENST00000564228	RNF214	Q8ND24	703 aa		13.28	□□□□□ -0.28
TCF4-222	ENST00000564228	API5	Q9BZZ5	524 aa	Known RBP	13.28	□□□□□ -0.28
TCF4-222	ENST00000564228	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.28	□□□□□ -0.28
TCF4-222	ENST00000564228	USP16	Q9Y5T5	823 aa		13.28	□□□□□ -0.28
TCF4-222	ENST00000564228	PTPRC	P08575	1304 aa		13.28	□□□□□ -0.28
TCF4-222	ENST00000564228	ONECUT3	O60422	494 aa	Predicted RBP	13.27	□□□□□ -0.28
TCF4-222	ENST00000564228	FLII	Q13045	1269 aa		13.27	□□□□□ -0.28
TCF4-222	ENST00000564228	PHAX	Q9H814	394 aa	Known RBP	13.27	□□□□□ -0.28
TCF4-222	ENST00000564228	KCNQ2	O43526	872 aa		13.27	□□□□□ -0.29
TCF4-222	ENST00000564228	BRD1	O95696	1058 aa		13.27	□□□□□ -0.29
TCF4-222	ENST00000564228	GSPT1	P15170	499 aa	Known RBP	13.27	□□□□□ -0.29
TCF4-222	ENST00000564228	MCM2	P49736	904 aa		13.27	□□□□□ -0.29
TCF4-222	ENST00000564228	TTC22	Q5TAA0	569 aa		13.27	□□□□□ -0.29
TCF4-222	ENST00000564228	ZGPAT	Q8N5A5	531 aa	Known RBP	13.27	□□□□□ -0.29
TCF4-222	ENST00000564228	TSC1	Q92574	1164 aa		13.27	□□□□□ -0.29
TCF4-222	ENST00000564228	DBF4	Q9UBU7	674 aa	Predicted RBP	13.27	□□□□□ -0.29
TCF4-222	ENST00000564228	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.27	□□□□□ -0.29
TCF4-222	ENST00000564228	PROSER3	Q2NL68	480 aa		13.26	□□□□□ -0.29
TCF4-222	ENST00000564228	BTAF1	O14981	1849 aa		13.26	□□□□□ -0.29
TCF4-222	ENST00000564228	RGS12	O14924	1447 aa		13.26	□□□□□ -0.29
TCF4-222	ENST00000564228	ABCC4	O15439	1325 aa		13.26	□□□□□ -0.29
TCF4-222	ENST00000564228	MYL6B	P14649	208 aa		13.25	□□□□□ -0.29
TCF4-222	ENST00000564228	PIP4K2A	P48426	406 aa	Predicted RBP	13.25	□□□□□ -0.29
TCF4-222	ENST00000564228	CASC1	Q6TDU7	716 aa		13.25	□□□□□ -0.29
TCF4-222	ENST00000564228	JARID2	Q92833	1246 aa	Predicted RBP	13.25	□□□□□ -0.29
TCF4-222	ENST00000564228	NHS	Q6T4R5	1651 aa		13.25	□□□□□ -0.29
TCF4-222	ENST00000564228		F6X3S4	739 aa		13.25	□□□□□ -0.29
TCF4-222	ENST00000564228	VASP	P50552	380 aa	Predicted RBP	13.25	□□□□□ -0.29
TCF4-222	ENST00000564228	SLC4A10	Q6U841	1118 aa		13.25	□□□□□ -0.29
TCF4-222	ENST00000564228	PLEKHM2	Q8IWE5	1019 aa		13.25	□□□□□ -0.29
TCF4-222	ENST00000564228	REC8	O95072	547 aa		13.24	□□□□□ -0.29
TCF4-222	ENST00000564228	RBM6	P78332	1123 aa	Known RBP	13.24	□□□□□ -0.29
TCF4-222	ENST00000564228	SLC20A2	Q08357	652 aa		13.24	□□□□□ -0.29
TCF4-222	ENST00000564228	FAM193A	P78312	1265 aa		13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	CUL4A	Q13619	759 aa		13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	KIAA1524	Q8TCG1	905 aa		13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	INTS4	Q96HW7	963 aa	Known RBP	13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	EP400	Q96L91	3159 aa		13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	TJP1	Q07157	1748 aa		13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	SPDYE4	A6NLX3	237 aa		13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	RIOK3	O14730	519 aa	Known RBP	13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	ADCY5	O95622	1261 aa		13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	U2AF2	P26368	475 aa	Known RBP eCLIP	13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	AIMP1	Q12904	312 aa	Known RBP	13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	PDIA6	Q15084	440 aa		13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	DNAJC10	Q8IXB1	793 aa		13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	SIRT2	Q8IXJ6	389 aa		13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	TMEM87A	Q8NBN3	555 aa		13.23	□□□□□ -0.29
TCF4-222	ENST00000564228	HYPK	Q9NX55	129 aa		13.23	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms